UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 2IYF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2IYF_UDP_B_1400 | 93% | 41% | 0.069 | 0.965 | 0.98 | 1.31 | 1 | 5 | 0 | 0 | 100% | 1 |
2IYF_UDP_A_1401 | 89% | 43% | 0.089 | 0.969 | 0.88 | 1.32 | - | 4 | 0 | 0 | 100% | 1 |
4M83_UDP_B_502 | 70% | 38% | 0.128 | 0.945 | 0.95 | 1.46 | 1 | 4 | 0 | 0 | 100% | 5 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |