UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 2VS3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2VS3_UDP_A_401 | 91% | 36% | 0.09 | 0.978 | 0.95 | 1.54 | - | 5 | 0 | 0 | 100% | 1 |
| 2VS3_UDP_B_401 | 91% | 39% | 0.093 | 0.979 | 0.94 | 1.43 | 1 | 5 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
| 2WGZ_UDP_A_1401 | 96% | 37% | 0.075 | 0.986 | 0.94 | 1.5 | 1 | 5 | 0 | 0 | 100% | 1 |
| 1GWW_UDP_B_1369 | 92% | 41% | 0.077 | 0.967 | 1.26 | 1.04 | 3 | 2 | 0 | 0 | 100% | 1 |
| 1GX0_UDP_A_1369 | 90% | 22% | 0.084 | 0.968 | 2.06 | 1.18 | 4 | 4 | 0 | 0 | 100% | 1 |
| 2JCK_UDP_A_3361 | 90% | 9% | 0.088 | 0.969 | 2.79 | 1.77 | 9 | 8 | 0 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 44% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
