XYL: Xylitol
XYL is a Ligand Of Interest in 3GNX designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3GNX_XYL_A_389 | 35% | 1% | 0.2 | 0.889 | 2.43 | 5.82 | 5 | 11 | 0 | 0 | 100% | 1 |
3GNX_XYL_E_389 | 24% | 3% | 0.216 | 0.847 | 2.36 | 3.54 | 4 | 7 | 1 | 0 | 100% | 1 |
5Y4J_XYL_A_402 | 99% | 30% | 0.047 | 0.983 | 0.97 | 1.81 | - | 4 | 0 | 0 | 100% | 1 |
4DUO_XYL_A_403 | 93% | 68% | 0.085 | 0.98 | 0.55 | 0.69 | - | - | 0 | 0 | 100% | 1 |
7DFK_XYL_A_402 | 76% | 36% | 0.095 | 0.932 | 1.11 | 1.41 | 1 | 2 | 0 | 0 | 100% | 1 |
8WDG_XYL_A_403 | 64% | 45% | 0.128 | 0.925 | 0.69 | 1.4 | - | 1 | 0 | 0 | 100% | 1 |
1S5N_XYL_A_1001 | 100% | 55% | 0.044 | 0.995 | 0.75 | 0.99 | - | - | 0 | 0 | 100% | 1 |
5NH6_XYL_C_502 | 85% | 49% | 0.108 | 0.974 | 0.71 | 1.23 | - | 1 | 0 | 0 | 100% | 1 |
1W3Y_XYL_A_1893 | 80% | 48% | 0.095 | 0.945 | 0.53 | 1.45 | - | 2 | 0 | 0 | 100% | 1 |