Ligand validation:3GP9

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 3GP9 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3GP9_GDP_B_138	25%	42%	0.202	0.84	0.92	1.3	1	4	0	0	100%	0.64
3GP9_GDP_C_138	20%	42%	0.219	0.82	0.95	1.29	1	4	0	0	100%	0.64
3GP9_GDP_F_138	14%	41%	0.282	0.839	0.95	1.35	1	4	0	0	100%	0.64
3GP9_GDP_A_138	9%	43%	0.339	0.83	0.91	1.27	1	3	0	0	100%	0.64
3GP9_GDP_E_138	7%	42%	0.331	0.787	0.92	1.31	1	3	0	0	100%	0.64
3GP9_GDP_D_138	4%	39%	0.341	0.73	0.95	1.44	1	4	2	0	100%	0.64
3FBE_GDP_A_138	11%	42%	0.308	0.829	0.89	1.33	-	5	2	0	100%	1
1RRG_GDP_A_183	100%	17%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
2CXX_GDP_B_2401	100%	29%	0.031	0.989	1.26	1.57	1	3	0	0	100%	1
4LUC_GDP_A_204	100%	40%	0.036	0.992	1.22	1.11	2	2	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
5KY2_GDP_A_403	100%	48%	0.036	0.989	0.98	1.04	1	1	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.