Ligand validation:3VDR

NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE

NAD is a Ligand Of Interest in 3VDR designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3VDR_NAD_C_301	54%	13%	0.179	0.944	1.76	2.21	12	14	10	0	100%	0.5
3VDR_NAD_B_303	51%	13%	0.183	0.938	1.72	2.2	12	14	11	0	100%	0.5
3VDR_NAD_A_303	41%	14%	0.201	0.918	1.71	2.18	11	12	11	0	100%	0.5
3VDR_NAD_D_302	38%	13%	0.205	0.909	1.72	2.19	12	12	10	0	100%	0.5
3W8F_NAD_A_301	100%	29%	0.046	0.987	1.46	1.38	8	8	1	0	100%	1
5B4V_NAD_A_301	99%	50%	0.052	0.984	0.79	1.15	-	3	1	0	100%	1
5B4T_NAD_A_301	99%	48%	0.057	0.986	0.84	1.15	1	4	2	0	100%	1
5B4U_NAD_A_301	99%	52%	0.054	0.982	0.74	1.1	1	3	1	0	100%	1
3W8D_NAD_A_301	97%	22%	0.058	0.975	1.65	1.6	10	5	1	0	100%	1
3CMC_NAD_R_408	100%	20%	0.016	0.998	1.63	1.74	4	9	0	0	100%	1
4RQU_NAD_B_403	100%	3%	0.019	0.997	3.51	2.61	13	18	0	0	100%	1
3EC7_NAD_A_400	100%	18%	0.025	0.995	1.8	1.74	5	8	1	0	100%	1
4URF_NAD_A_1249	100%	44%	0.034	0.995	0.96	1.2	2	4	0	0	100%	1
2C5A_NAD_B_1374	100%	23%	0.039	0.992	1.34	1.84	6	7	1	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.