TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 4NV1 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4NV1_TYD_D_301 | 63% | 26% | 0.112 | 0.908 | 0.75 | 2.2 | 1 | 8 | 2 | 0 | 100% | 1 |
| 4NV1_TYD_F_301 | 61% | 17% | 0.125 | 0.912 | 0.77 | 2.79 | - | 11 | 2 | 0 | 100% | 1 |
| 4NV1_TYD_H_301 | 54% | 26% | 0.116 | 0.88 | 0.54 | 2.39 | - | 9 | 1 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 99% | 22% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 99% | 32% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 33% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 98% | 31% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3RSC_TYD_A_397 | 98% | 39% | 0.055 | 0.977 | 0.74 | 1.61 | 1 | 3 | 0 | 0 | 100% | 1 |
