Ligand validation:4Y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4Y28_CLA_B_1235	84%	6%	0.094	0.955	2.36	2.64	19	22	1	1	100%	1
4Y28_CLA_B_1229	82%	6%	0.107	0.963	2.37	2.6	20	23	5	1	100%	1
4Y28_CLA_B_1203	79%	7%	0.111	0.958	2.33	2.6	19	22	3	1	100%	1
4Y28_CLA_A_1138	79%	7%	0.112	0.957	2.4	2.48	20	24	3	1	100%	1
4Y28_CLA_A_1013	77%	6%	0.115	0.955	2.36	2.58	20	23	6	1	100%	1
4Y28_CLA_A_1140	76%	6%	0.116	0.953	2.39	2.55	20	23	3	1	100%	1
4Y28_CLA_B_1230	75%	5%	0.098	0.95	2.48	2.86	17	22	8	1	89%	0.8923
4Y28_CLA_A_1103	74%	6%	0.122	0.953	2.34	2.61	20	24	6	1	100%	1
4Y28_CLA_A_1128	74%	7%	0.115	0.945	2.37	2.51	19	21	10	1	100%	1
4Y28_CLA_B_1023	71%	7%	0.121	0.942	2.36	2.55	19	24	4	1	100%	1
4Y28_CLA_B_1206	71%	6%	0.125	0.945	2.39	2.6	19	24	5	1	100%	1
4Y28_CLA_A_1107	70%	6%	0.126	0.944	2.38	2.58	20	23	3	1	100%	1
4Y28_CLA_B_1210	70%	7%	0.138	0.956	2.34	2.56	19	23	7	1	100%	1
4Y28_CLA_A_1101	69%	6%	0.121	0.935	2.36	2.65	19	22	6	1	100%	1
4Y28_CLA_B_1225	69%	7%	0.137	0.951	2.38	2.52	20	21	3	1	100%	1
4Y28_CLA_A_1104	69%	6%	0.126	0.939	2.37	2.61	20	22	3	1	100%	1
4Y28_CLA_F_1302	67%	4%	0.093	0.943	2.62	2.94	18	21	6	1	77%	0.7692
4Y28_CLA_A_1125	67%	6%	0.124	0.947	2.43	2.69	19	24	2	1	92%	0.9231
4Y28_CLA_B_1202	67%	6%	0.143	0.951	2.35	2.65	19	23	5	1	100%	1
4Y28_CLA_4_4009	67%	5%	0.111	0.959	2.48	2.93	19	22	4	1	77%	0.7692
4Y28_CLA_A_1109	66%	6%	0.125	0.931	2.37	2.58	19	22	7	1	100%	1
4Y28_CLA_A_1119	66%	7%	0.136	0.942	2.37	2.54	19	23	6	1	100%	1
4Y28_CLA_A_1106	66%	6%	0.133	0.938	2.39	2.61	20	23	5	1	100%	1
4Y28_CLA_A_1132	66%	7%	0.14	0.945	2.37	2.56	20	23	4	1	100%	1
4Y28_CLA_B_1205	66%	7%	0.149	0.954	2.36	2.46	19	23	5	1	100%	1
4Y28_CLA_A_1136	65%	5%	0.115	0.942	2.56	2.78	20	25	6	1	86%	0.8615
4Y28_CLA_B_1227	65%	6%	0.13	0.932	2.37	2.59	20	24	6	1	100%	1
4Y28_CLA_B_1215	65%	6%	0.133	0.949	2.5	2.68	20	22	0	1	92%	0.9231
4Y28_CLA_B_1223	65%	6%	0.135	0.936	2.34	2.6	19	24	3	0	100%	1
4Y28_CLA_B_1211	64%	6%	0.134	0.933	2.34	2.63	19	25	6	1	100%	1
4Y28_CLA_B_1221	64%	6%	0.143	0.942	2.38	2.62	20	25	11	1	100%	1
4Y28_CLA_4_4003	64%	7%	0.132	0.93	2.25	2.59	20	24	3	1	100%	1
4Y28_CLA_B_1240	63%	6%	0.124	0.92	2.36	2.6	19	25	8	1	100%	1
4Y28_CLA_4_4005	63%	6%	0.128	0.938	2.28	2.84	18	27	15	1	92%	0.9231
4Y28_CLA_A_1111	63%	6%	0.13	0.939	2.46	2.64	19	24	7	1	92%	0.9231
4Y28_CLA_A_1102	63%	4%	0.109	0.945	2.71	2.86	19	21	3	1	77%	0.7692
4Y28_CLA_1_1012	63%	5%	0.107	0.942	2.57	2.89	20	23	15	1	77%	0.7692
4Y28_CLA_B_1216	63%	6%	0.14	0.934	2.38	2.56	20	23	6	1	100%	1
4Y28_CLA_B_1226	63%	7%	0.142	0.936	2.35	2.55	19	22	5	1	100%	1
4Y28_CLA_1_1004	62%	7%	0.137	0.93	2.22	2.65	19	23	21	1	100%	1
4Y28_CLA_B_1239	62%	6%	0.139	0.932	2.37	2.58	20	22	4	1	100%	1
4Y28_CLA_4_4012	62%	7%	0.142	0.935	2.21	2.68	18	26	25	1	100%	1
4Y28_CLA_A_1122	62%	7%	0.147	0.939	2.37	2.53	19	22	2	1	100%	1
4Y28_CLA_A_1237	61%	5%	0.136	0.939	2.46	2.8	19	23	4	1	92%	0.9231
4Y28_CLA_A_1117	61%	7%	0.162	0.951	2.38	2.54	19	22	3	1	100%	1
4Y28_CLA_B_1224	60%	6%	0.15	0.937	2.36	2.58	19	23	5	1	100%	1
4Y28_CLA_B_1231	60%	6%	0.119	0.918	2.5	2.6	20	23	2	1	92%	0.9231
4Y28_CLA_A_1127	60%	7%	0.152	0.938	2.39	2.53	19	22	5	1	100%	1
4Y28_CLA_L_1502	59%	6%	0.134	0.931	2.34	2.73	18	24	12	1	92%	0.9231
4Y28_CLA_2_2004	59%	7%	0.14	0.923	2.36	2.51	17	23	15	1	100%	1
4Y28_CLA_2_2003	59%	5%	0.12	0.93	2.38	3.05	18	24	25	1	85%	0.8462
4Y28_CLA_A_1139	59%	7%	0.137	0.919	2.37	2.56	20	23	4	1	100%	1
4Y28_CLA_B_1207	59%	6%	0.144	0.926	2.37	2.62	20	23	8	0	100%	1
4Y28_CLA_A_1129	59%	4%	0.11	0.932	2.7	2.92	19	23	1	1	77%	0.7692
4Y28_CLA_4_4004	59%	6%	0.14	0.935	2.31	2.68	18	24	16	1	92%	0.9231
4Y28_CLA_1_1003	58%	5%	0.137	0.943	2.42	2.83	21	26	28	1	85%	0.8462
4Y28_CLA_2_2008	58%	4%	0.129	0.948	2.48	3.32	19	30	10	1	77%	0.7692
4Y28_CLA_A_1116	58%	5%	0.145	0.936	2.47	2.75	19	22	5	1	92%	0.9231
4Y28_CLA_B_1012	58%	7%	0.149	0.926	2.36	2.5	19	22	6	1	100%	1
4Y28_CLA_A_1022	57%	7%	0.144	0.92	2.38	2.48	19	23	7	1	100%	1
4Y28_CLA_B_1222	57%	6%	0.154	0.929	2.36	2.64	19	25	5	1	100%	1
4Y28_CLA_A_1130	57%	4%	0.129	0.945	2.74	2.94	20	21	3	0	77%	0.7692
4Y28_CLA_A_1126	57%	6%	0.155	0.929	2.38	2.56	20	23	9	1	100%	1
4Y28_CLA_A_1137	57%	5%	0.134	0.935	2.58	2.74	20	22	2	1	85%	0.8462
4Y28_CLA_B_1236	56%	5%	0.136	0.937	2.58	2.84	19	22	5	1	85%	0.8462
4Y28_CLA_2_2009	56%	4%	0.115	0.929	2.57	2.94	20	23	11	1	77%	0.7692
4Y28_CLA_B_1021	56%	6%	0.15	0.923	2.37	2.64	18	23	6	1	100%	1
4Y28_CLA_2_2007	56%	6%	0.147	0.933	2.37	2.67	19	22	20	1	92%	0.9231
4Y28_CLA_B_1234	56%	5%	0.148	0.934	2.49	2.72	20	24	7	1	92%	0.9231
4Y28_CLA_A_1123	56%	6%	0.163	0.935	2.39	2.59	20	23	4	1	100%	1
4Y28_CLA_B_1204	55%	5%	0.121	0.918	2.61	2.78	19	21	8	1	85%	0.8462
4Y28_CLA_A_1112	55%	7%	0.152	0.922	2.36	2.54	20	22	8	1	100%	1
4Y28_CLA_2_2005	55%	5%	0.129	0.924	2.49	2.76	18	24	15	1	85%	0.8462
4Y28_CLA_A_1131	55%	7%	0.163	0.931	2.37	2.56	20	21	3	1	100%	1
4Y28_CLA_B_1220	55%	7%	0.151	0.918	2.37	2.47	20	23	9	0	100%	1
4Y28_CLA_2_2001	54%	6%	0.156	0.936	2.29	2.81	19	27	26	1	92%	0.9231
4Y28_CLA_3_3003	54%	6%	0.143	0.922	2.36	2.73	19	24	31	1	92%	0.9231
4Y28_CLA_2_2012	54%	5%	0.134	0.926	2.39	2.85	18	23	21	1	85%	0.8462
4Y28_CLA_A_1133	54%	5%	0.137	0.929	2.58	2.77	20	22	3	0	85%	0.8462
4Y28_CLA_3_3005	54%	5%	0.144	0.936	2.45	2.89	19	24	13	1	85%	0.8462
4Y28_CLA_A_1110	53%	5%	0.154	0.943	2.6	2.73	20	23	7	1	85%	0.8462
4Y28_CLA_4_4017	53%	7%	0.157	0.918	2.21	2.6	19	25	10	1	100%	1
4Y28_CLA_A_1120	53%	6%	0.139	0.912	2.46	2.7	19	21	1	1	92%	0.9231
4Y28_CLA_B_1238	52%	6%	0.15	0.908	2.39	2.55	20	21	9	1	100%	1
4Y28_CLA_A_1124	52%	5%	0.136	0.92	2.59	2.85	20	23	4	1	85%	0.8462
4Y28_CLA_A_1135	52%	4%	0.136	0.931	2.68	2.93	19	22	4	1	78%	0.7846
4Y28_CLA_B_1214	52%	5%	0.157	0.93	2.5	2.73	19	23	1	1	91%	0.9077
4Y28_CLA_A_1105	52%	4%	0.122	0.916	2.7	2.89	20	25	1	1	78%	0.7846
4Y28_CLA_3_3004	51%	6%	0.154	0.923	2.32	2.67	19	20	14	1	92%	0.9231
4Y28_CLA_B_1208	51%	5%	0.126	0.908	2.6	2.82	20	22	4	1	85%	0.8462
4Y28_CLA_2_2002	51%	4%	0.117	0.923	2.65	2.99	19	24	21	1	71%	0.7077
4Y28_CLA_3_3012	51%	4%	0.126	0.92	2.5	3.08	19	23	28	1	77%	0.7692
4Y28_CLA_1_1005	51%	5%	0.128	0.908	2.39	2.89	19	26	8	1	85%	0.8462
4Y28_CLA_A_1118	50%	4%	0.129	0.932	2.86	2.91	18	20	3	1	71%	0.7077
4Y28_CLA_3_3001	50%	4%	0.112	0.902	2.56	2.97	19	21	23	1	77%	0.7692
4Y28_CLA_A_1108	50%	4%	0.123	0.924	2.9	2.84	20	21	3	1	71%	0.7077
4Y28_CLA_1_1007	50%	4%	0.124	0.925	2.65	3.16	19	21	9	1	71%	0.7077
4Y28_CLA_B_1232	49%	5%	0.121	0.896	2.58	2.74	20	21	2	1	85%	0.8462
4Y28_CLA_A_1121	49%	5%	0.13	0.903	2.58	2.86	20	24	3	1	85%	0.8462
4Y28_CLA_F_1301	49%	4%	0.119	0.919	2.64	2.91	17	18	3	1	69%	0.6923
4Y28_CLA_B_1209	49%	4%	0.128	0.925	2.91	2.85	19	19	2	1	71%	0.7077
4Y28_CLA_B_1213	48%	6%	0.146	0.901	2.47	2.67	18	22	2	0	92%	0.9231
4Y28_CLA_B_1228	47%	6%	0.155	0.909	2.48	2.65	19	22	1	1	92%	0.9231
4Y28_CLA_B_1212	47%	5%	0.157	0.925	2.57	2.83	20	23	5	1	85%	0.8462
4Y28_CLA_L_1503	47%	4%	0.122	0.901	2.56	2.97	18	22	11	1	77%	0.7692
4Y28_CLA_B_1219	46%	6%	0.16	0.909	2.48	2.6	20	21	2	1	92%	0.9231
4Y28_CLA_4_4007	46%	6%	0.168	0.916	2.27	2.88	17	23	7	1	92%	0.9231
4Y28_CLA_G_1002	45%	4%	0.107	0.891	2.74	2.93	20	22	21	1	71%	0.7077
4Y28_CLA_B_1201	45%	4%	0.138	0.911	2.7	2.86	20	24	1	1	77%	0.7692
4Y28_CLA_4_4002	45%	4%	0.147	0.918	2.56	2.97	17	26	5	1	77%	0.7692
4Y28_CLA_3_3017	42%	4%	0.141	0.914	2.73	2.84	18	21	5	1	71%	0.7077
4Y28_CLA_4_4001	41%	6%	0.171	0.901	2.3	2.76	19	26	20	1	92%	0.9231
4Y28_CLA_B_1218	41%	6%	0.169	0.884	2.37	2.63	20	22	7	1	100%	1
4Y28_CLA_1_1014	41%	4%	0.118	0.884	2.7	3.07	19	22	13	1	71%	0.7077
4Y28_CLA_B_1217	41%	4%	0.143	0.908	2.88	2.84	20	19	1	1	71%	0.7077
4Y28_CLA_1_1002	40%	4%	0.146	0.907	2.63	3.08	18	22	15	1	71%	0.7077
4Y28_CLA_G_1001	39%	5%	0.136	0.871	2.43	2.88	18	28	26	1	85%	0.8462
4Y28_CLA_3_3006	35%	4%	0.117	0.845	2.57	2.97	20	24	28	1	77%	0.7692
4Y28_CLA_4_4008	35%	3%	0.142	0.88	2.6	3.32	18	26	8	1	71%	0.7077
4Y28_CLA_A_1114	34%	4%	0.121	0.856	2.89	2.86	19	20	2	1	71%	0.7077
4Y28_CLA_2_2006	34%	5%	0.154	0.864	2.49	2.8	18	22	17	1	85%	0.8462
4Y28_CLA_1_1006	34%	4%	0.14	0.862	2.59	2.95	21	23	10	1	77%	0.7692
4Y28_CLA_1_1011	33%	5%	0.166	0.888	2.52	2.93	18	24	11	1	77%	0.7692
4Y28_CLA_A_1151	33%	4%	0.127	0.846	2.76	2.9	20	20	3	1	77%	0.7692
4Y28_CLA_A_1134	33%	5%	0.16	0.864	2.59	2.78	19	22	1	1	85%	0.8462
4Y28_CLA_A_1115	31%	4%	0.155	0.874	2.89	2.79	20	19	3	1	71%	0.7077
4Y28_CLA_3_3002	30%	4%	0.153	0.868	2.68	3.03	20	25	4	1	71%	0.7077
4Y28_CLA_L_1501	29%	4%	0.153	0.849	2.57	2.94	18	25	11	1	77%	0.7692
4Y28_CLA_4_4006	28%	5%	0.162	0.857	2.51	2.85	18	23	21	1	77%	0.7692
4Y28_CLA_1_1001	28%	6%	0.167	0.831	2.3	2.74	19	21	43	1	92%	0.9231
4Y28_CLA_A_1113	26%	4%	0.156	0.851	2.87	2.83	19	21	2	1	71%	0.7077
4Y28_CLA_G_1003	26%	6%	0.159	0.811	2.35	2.74	19	25	21	1	92%	0.9231
4Y28_CLA_1_1008	25%	4%	0.171	0.86	2.67	2.98	18	24	25	1	71%	0.7077
4Y28_CLA_H_1000	23%	4%	0.145	0.818	2.88	2.84	19	19	4	1	71%	0.7077
4Y28_CLA_3_3013	19%	5%	0.157	0.8	2.77	2.67	20	20	21	1	71%	0.7077
4Y28_CLA_3_3018	18%	4%	0.158	0.783	2.57	3.03	21	25	14	1	77%	0.7692
4Y28_CLA_1_1013	18%	4%	0.169	0.804	2.74	2.98	20	19	15	1	71%	0.7077
4Y28_CLA_K_1001	17%	4%	0.157	0.784	2.73	3.1	19	20	6	1	71%	0.7077
4Y28_CLA_3_3007	16%	4%	0.178	0.789	2.58	2.93	20	24	6	1	77%	0.7692
4Y28_CLA_2_2016	12%	3%	0.19	0.755	2.62	3.57	18	29	19	1	77%	0.7692
4Y28_CLA_3_3008	8%	3%	0.167	0.688	2.54	3.48	18	27	9	1	74%	0.7385
4Y28_CLA_4_4016	7%	4%	0.177	0.682	2.76	2.93	18	23	18	1	71%	0.7077
4Y28_CLA_3_3010	7%	6%	0.263	0.725	2.34	2.78	18	23	22	1	92%	0.9231
4Y28_CLA_2_2019	6%	2%	0.168	0.707	3.22	3.34	14	16	0	1	42%	0.412
4Y28_CLA_J_1302	5%	4%	0.204	0.655	2.73	2.96	20	23	7	1	77%	0.7692
4Y28_CLA_3_3019	1%	2%	0.273	0.446	3.33	3.29	15	15	1	1	42%	0.412
4XK8_CLA_b_803	92%	8%	0.072	0.963	2.07	2.52	16	26	0	1	100%	1
5L8R_CLA_A_839	92%	25%	0.078	0.969	1.32	1.73	6	11	5	1	100%	1
4RKU_CLA_B_9010	78%	7%	0.103	0.945	2.2	2.61	16	25	14	1	100%	1
7DKZ_CLA_A_808	72%	27%	0.153	0.977	1.36	1.59	8	11	4	1	100%	1
6ZXS_CLA_1_5012	58%	15%	0.12	0.952	1.62	2.11	9	13	2	1	71%	0.7077
5GTI_CLA_a_405	100%	7%	0.036	0.982	2.11	2.77	15	30	0	1	100%	1
5V2C_CLA_B_604	99%	14%	0.049	0.986	1.64	2.25	13	20	0	1	100%	1
2D2C_CLA_O_1201	99%	10%	0.057	0.991	2.34	1.98	19	15	7	4	100%	1
5B5E_CLA_A_405	99%	11%	0.046	0.976	1.9	2.26	16	28	0	0	100%	1
5WS6_CLA_a_350	99%	7%	0.048	0.975	2.02	2.86	16	26	0	1	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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4Y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB