KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
KDO is a Ligand Of Interest in 5FVN designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5FVN_KDO_E_403 | 48% | 38% | 0.161 | 0.914 | 0.68 | 1.7 | - | 3 | 3 | 0 | 94% | 0.9375 |
| 5FVN_KDO_D_413 | 32% | 34% | 0.195 | 0.88 | 0.9 | 1.68 | 1 | 3 | 2 | 0 | 94% | 0.9375 |
| 5FVN_KDO_A_412 | 25% | 40% | 0.236 | 0.886 | 0.88 | 1.44 | 1 | 3 | 2 | 0 | 94% | 0.9375 |
| 3DUR_KDO_A_303 | 100% | 29% | 0.021 | 0.994 | 1.55 | 1.32 | 3 | 2 | 0 | 0 | 100% | 1 |
| 3DUU_KDO_B_114 | 100% | 43% | 0.022 | 0.993 | 1.01 | 1.21 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8FUX_KDO_A_405 | 97% | 8% | 0.054 | 0.982 | 2.76 | 1.86 | 3 | 8 | 0 | 0 | 94% | 0.9375 |
| 3K8D_KDO_D_1244 | 96% | 10% | 0.064 | 0.983 | 2.6 | 1.77 | 6 | 6 | 0 | 1 | 94% | 0.9375 |
| 3DUV_KDO_A_263 | 95% | 24% | 0.052 | 0.955 | 0.95 | 2.11 | 1 | 4 | 0 | 1 | 100% | 1 |
