XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 5NHE designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5NHE_XYS_D_504 | 52% | 47% | 0.159 | 0.915 | 0.95 | 1.08 | - | 1 | 1 | 0 | 100% | 1 |
| 5NHE_XYS_B_505 | 26% | 37% | 0.218 | 0.861 | 1 | 1.45 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5NHE_XYS_C_503 | 22% | 10% | 0.221 | 0.84 | 1.95 | 2.35 | 3 | 5 | 1 | 0 | 100% | 1 |
| 5NHE_XYS_A_505 | 19% | 27% | 0.248 | 0.845 | 1.15 | 1.79 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5NHE_XYS_D_503 | 18% | 26% | 0.236 | 0.824 | 1.37 | 1.64 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5NHE_XYS_C_505 | 16% | 43% | 0.267 | 0.839 | 0.96 | 1.25 | - | - | 0 | 0 | 100% | 1 |
| 5NH7_XYS_C_505 | 49% | 49% | 0.167 | 0.913 | 0.84 | 1.13 | - | 2 | 1 | 0 | 100% | 1 |
| 5NHD_XYS_D_504 | 43% | 42% | 0.177 | 0.899 | 0.91 | 1.35 | - | 2 | 0 | 0 | 100% | 1 |
| 5A03_XYS_B_1342 | 92% | 33% | 0.063 | 0.953 | 1.68 | 1.01 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 91% | 61% | 0.064 | 0.967 | 0.83 | 0.66 | - | - | 0 | 0 | 90% | 0.9 |
| 8BQA_XYS_AAA_402 | 88% | 34% | 0.058 | 0.951 | 0.83 | 1.77 | - | 3 | 0 | 0 | 90% | 0.9 |
| 7PLC_XYS_C_302 | 85% | 63% | 0.096 | 0.961 | 0.55 | 0.87 | - | 1 | 1 | 0 | 100% | 1 |
| 2CDC_XYS_D_1371 | 82% | 48% | 0.1 | 0.954 | 1.01 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
