UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5UB5 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5UB5_UDP_A_404 | 91% | 63% | 0.1 | 0.989 | 0.58 | 0.82 | - | 2 | 0 | 0 | 100% | 1 |
| 5L0T_UDP_A_404 | 99% | 41% | 0.059 | 0.991 | 0.86 | 1.44 | 2 | 5 | 0 | 0 | 100% | 1 |
| 5L0V_UDP_A_1005 | 99% | 34% | 0.057 | 0.987 | 1.13 | 1.48 | 3 | 5 | 1 | 0 | 100% | 1 |
| 5L0S_UDP_A_1004 | 97% | 45% | 0.07 | 0.988 | 0.87 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5L0R_UDP_A_403 | 97% | 32% | 0.071 | 0.988 | 1.19 | 1.52 | 3 | 5 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |
