GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5V68 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5V68_GDP_E_401 | 48% | 41% | 0.179 | 0.923 | 0.89 | 1.37 | - | 5 | 0 | 0 | 100% | 1 |
| 5V68_GDP_B_401 | 47% | 43% | 0.205 | 0.945 | 0.91 | 1.27 | 1 | 5 | 0 | 0 | 100% | 1 |
| 1RQ7_GDP_A_380 | 96% | 37% | 0.075 | 0.982 | 1.19 | 1.26 | 1 | 4 | 0 | 0 | 100% | 1 |
| 6YM1_GDP_A_401 | 93% | 22% | 0.096 | 0.991 | 1.1 | 2.14 | 2 | 7 | 0 | 0 | 100% | 1 |
| 4KWE_GDP_C_1000 | 86% | 46% | 0.107 | 0.976 | 0.96 | 1.11 | 1 | 4 | 0 | 0 | 100% | 1 |
| 6Y1U_GDP_A_409 | 73% | 16% | 0.115 | 0.943 | 1.38 | 2.26 | 3 | 9 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
