TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 6B5E designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 6B5E_TYD_B_304 | 96% | 23% | 0.066 | 0.974 | 1.17 | 1.98 | 2 | 4 | 0 | 0 | 100% | 1 |
| 6B5E_TYD_G_303 | 94% | 25% | 0.075 | 0.972 | 1.15 | 1.91 | 2 | 2 | 0 | 0 | 100% | 1 |
| 6B5E_TYD_A_303 | 94% | 25% | 0.077 | 0.974 | 1.2 | 1.84 | 1 | 3 | 0 | 0 | 100% | 1 |
| 6B5E_TYD_D_303 | 92% | 27% | 0.077 | 0.968 | 1 | 1.94 | 1 | 4 | 0 | 0 | 100% | 1 |
| 6B5E_TYD_C_303 | 88% | 25% | 0.088 | 0.963 | 1.11 | 1.92 | 1 | 2 | 0 | 0 | 100% | 1 |
| 6B5E_TYD_H_303 | 74% | 26% | 0.111 | 0.942 | 1.08 | 1.87 | 1 | 4 | 0 | 0 | 100% | 1 |
| 6B5K_TYD_B_304 | 83% | 34% | 0.089 | 0.948 | 1 | 1.61 | 2 | 2 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_B_377 | 99% | 22% | 0.054 | 0.987 | 1.12 | 2.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 99% | 32% | 0.057 | 0.988 | 1 | 1.68 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 33% | 0.06 | 0.987 | 0.99 | 1.64 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3EM1_TYD_B_143 | 98% | 31% | 0.059 | 0.984 | 1.01 | 1.71 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3RSC_TYD_A_397 | 98% | 39% | 0.055 | 0.977 | 0.74 | 1.61 | 1 | 3 | 0 | 0 | 100% | 1 |
