PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 6DNA designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 6DNA_PLP_D_502 | 22% | 10% | 0.285 | 0.901 | 2.42 | 1.93 | 3 | 6 | 2 | 0 | 100% | 0.875 |
| 6DNA_PLP_F_501 | 15% | 9% | 0.355 | 0.919 | 2.73 | 1.81 | 3 | 7 | 3 | 0 | 100% | 0.875 |
| 6DNA_PLP_E_501 | 6% | 7% | 0.374 | 0.811 | 2.75 | 2.01 | 3 | 5 | 6 | 0 | 100% | 0.8 |
| 6DNA_PLP_C_501 | 3% | 10% | 0.456 | 0.812 | 2.8 | 1.6 | 3 | 6 | 2 | 0 | 100% | 0.8125 |
| 6DNA_PLP_B_502 | 3% | 10% | 0.465 | 0.801 | 2.9 | 1.45 | 3 | 2 | 2 | 0 | 100% | 0.8125 |
| 6DNA_PLP_A_502 | 2% | 8% | 0.562 | 0.806 | 2.9 | 1.81 | 3 | 5 | 1 | 0 | 100% | 0.8125 |
| 3II0_PLP_D_4 | 87% | 22% | 0.114 | 0.987 | 1.14 | 2.05 | 1 | 6 | 0 | 0 | 100% | 1 |
| 6DND_PLP_B_502 | 68% | 7% | 0.162 | 0.973 | 2.89 | 1.97 | 6 | 6 | 4 | 0 | 100% | 0.875 |
| 6LIG_PLP_B_501 | 44% | 37% | 0.22 | 0.951 | 1.18 | 1.3 | 1 | 3 | 0 | 0 | 100% | 1 |
| 2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
| 9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
| 4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
| 3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
| 4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |
