UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 8ZLY designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
8ZLY_UDP_D_604 | 91% | 28% | 0.083 | 0.971 | 1.16 | 1.71 | 2 | 8 | 0 | 0 | 100% | 1 |
8ZLY_UDP_A_604 | 90% | 18% | 0.101 | 0.985 | 1.74 | 1.77 | 2 | 9 | 0 | 0 | 100% | 1 |
8ZLY_UDP_G_604 | 90% | 19% | 0.102 | 0.985 | 1.4 | 2.01 | 2 | 10 | 0 | 0 | 100% | 1 |
8ZLY_UDP_C_604 | 89% | 28% | 0.109 | 0.987 | 1.11 | 1.75 | 1 | 6 | 0 | 0 | 100% | 1 |
8ZLY_UDP_E_604 | 88% | 25% | 0.104 | 0.98 | 1.2 | 1.83 | 2 | 7 | 1 | 0 | 100% | 1 |
8ZLY_UDP_B_604 | 87% | 28% | 0.083 | 0.956 | 1.12 | 1.75 | 2 | 8 | 0 | 0 | 100% | 1 |
8ZLY_UDP_F_604 | 84% | 25% | 0.119 | 0.983 | 1.09 | 1.95 | 1 | 7 | 1 | 0 | 100% | 1 |
8XW9_UDP_A_606 | 94% | 26% | 0.088 | 0.986 | 1.12 | 1.85 | 2 | 9 | 0 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |