Download MendeleyAtomic structure of Glucose isomerase
Nowak, E., Panjikar, S., Tucker, P.A.To be published.
1MNZ
Atomic structure of Glucose isomerase
- PDB DOI: https://doi.org/10.2210/pdb1MNZ/pdb
- Classification: ISOMERASE
- Organism(s): Streptomyces rubiginosus
- Mutation(s): No
- Deposited: 2002-09-06 Released: 2002-09-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.99 Å
- R-Value Free: 0.134
- R-Value Work: 0.123
- R-Value Observed: 0.123
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Xylose isomerase | 388 | N/A | Mutation(s): 0 EC: 5.3.1.5 |  | |
UniProt | |||||
Find proteins for P24300 (Streptomyces rubiginosus) Explore P24300 Go to UniProtKB: P24300 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P24300 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | D [auth A] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
| MRD Query on MRD | E [auth A] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.99 Å
- R-Value Free: 0.134
- R-Value Work: 0.123
- R-Value Observed: 0.123
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 93.88 | α = 90 |
| b = 99.68 | β = 90 |
| c = 102.9 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| SHELXL-97 | refinement |
Entry History
Deposition Data
- Released Date: 2002-09-25 Deposition Author(s): Nowak, E., Panjikar, S., Tucker, P.A.
Revision History (Full details and data files)
- Version 1.0: 2002-09-25
Type: Initial release - Version 1.1: 2008-04-28
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations, Refinement description
