1TW0

Native crystal structure of SPE16

PDB DOI: https://doi.org/10.2210/pdb1TW0/pdb

Classification: PLANT PROTEIN
Organism(s): Pachyrhizus erosus
Mutation(s): No

Deposited: 2004-06-30 Released: 2005-10-11
Deposition Author(s): Wu, F., Wei, Z., Zhou, Z., Gong, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.287
R-Value Work: 0.199
R-Value Observed: 0.199

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Native crystal structure of SPE16

Wu, F., Wei, Z., Zhou, Z., Gong, W.

To be published.

Macromolecule Content

Total Structure Weight: 32.79 kDa
Atom Count: 2,378
Modelled Residue Count: 314
Deposited Residue Count: 314
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
pathogenesis-related class 10 protein SPE-16	A, B	157	Pachyrhizus erosus	Mutation(s): 0
UniProt
Find proteins for Q6T6J0 (Pachyrhizus erosus) Explore Q6T6J0 Go to UniProtKB: Q6T6J0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6T6J0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.287
R-Value Work: 0.199
R-Value Observed: 0.199
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.293	α = 90
b = 63.361	β = 90
c = 72.771	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-10-11

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-10-11
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.