Download MendeleyCrystal Structure of a hypothetical protein (ykul) containing CBS domains from Bacillus subtilis.
Kumaran, D., Swaminathan, S.To be published.
1YAV
Crystal structure of CBS domain-containing protein ykuL from Bacillus subtilis
- PDB DOI: https://doi.org/10.2210/pdb1YAV/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-12-17 Released: 2004-12-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.262
- R-Value Work: 0.228
- R-Value Observed: 0.228
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| hypothetical protein BSU14130 | 159 | Bacillus subtilis | Mutation(s): 0 Gene Names: ykuL |  | |
UniProt | |||||
Find proteins for O31698 (Bacillus subtilis (strain 168)) Explore O31698 Go to UniProtKB: O31698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O31698 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.262
- R-Value Work: 0.228
- R-Value Observed: 0.228
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.564 | α = 90 |
| b = 69.592 | β = 90 |
| c = 70.903 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data scaling |
| SOLVE | phasing |
| SHARP | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2004-12-28 Deposition Author(s): Kumaran, D., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2004-12-28
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-14
Changes: Data collection, Database references
