Download MendeleyStructure of Actinomycin D Bound with (Gaagcttc)2 and (Gatgcttc)2 and its Binding to the (Cag)N:(Ctg)N Triplet Sequence by NMR Analysis
Lian, C., Robinson, H., Wang, A.H.-J.(1996) J Am Chem Soc 118: 8791
1DSD
NMR STUDY OF DNA (5'-D(*GP*AP*TP*GP*CP*TP*TP*C)-3') T:T MISMATCHED DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE
- PDB DOI: https://doi.org/10.2210/pdb1DSD/pdb
- NAKB: 1DSD
- Classification: DNA/ANTIBIOTIC
- Organism(s): Streptomyces antibioticus
- Mutation(s): No
- Deposited: 1996-08-10 Released: 1996-12-07
Experimental Data Snapshot
- Method: SOLUTION NMR
- Conformers Submitted: 1
- Selection Criteria: MINIMIZED AVERAGE
wwPDB Validation 3D Report Full Report
This is version 3.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ACTINOMYCIN D | 11 | Streptomyces antibioticus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MVA Query on MVA | C | L-PEPTIDE LINKING | C6 H13 N O2 |  | VAL |
| SAR Query on SAR | C | PEPTIDE LINKING | C3 H7 N O2 |  | GLY |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_000001 Query on PRD_000001 | C | Actinomycin D | Polypeptide / Antibiotic |  | |
Experimental Data & Validation
Experimental Data
- Method: SOLUTION NMR
- Conformers Submitted: 1
- Selection Criteria: MINIMIZED AVERAGE
Entry History
Deposition Data
- Released Date: 1996-12-07 Deposition Author(s): Lian, C., Robinson, H., Wang, A.H.-J.
Revision History (Full details and data files)
- Version 1.0: 1996-12-07
Type: Initial release - Version 1.1: 2011-06-14
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2011-07-27
Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary - Version 1.4: 2012-12-12
Changes: Other - Version 2.0: 2023-11-15
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Other - Version 3.0: 2024-07-10
Changes: Data collection, Derived calculations, Non-polymer description, Structure summary - Version 3.1: 2024-11-06
Changes: Structure summary
