1IS7

Crystal structure of rat GTPCHI/GFRP stimulatory complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.228 

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Literature

Crystal structure of the stimulatory complex of GTP cyclohydrolase I and its feedback regulatory protein GFRP.

Maita, N.Okada, K.Hatakeyama, K.Hakoshima, T.

(2002) Proc Natl Acad Sci U S A 99: 1212-1217

  • DOI: https://doi.org/10.1073/pnas.022646999
  • Primary Citation of Related Structures:  
    1IS7, 1IS8

  • PubMed Abstract: 

    In the presence of phenylalanine, GTP cyclohydrolase I feedback regulatory protein (GFRP) forms a stimulatory 360-kDa complex with GTP cyclohydrolase I (GTPCHI), which is the rate-limiting enzyme in the biosynthesis of tetrahydrobiopterin. The crystal structure of the stimulatory complex reveals that the GTPCHI decamer is sandwiched by two GFRP homopentamers. Each GFRP pentamer forms a symmetrical five-membered ring similar to beta-propeller. Five phenylalanine molecules are buried inside each interface between GFRP and GTPCHI, thus enhancing the binding of these proteins. The complex structure suggests that phenylalanine-induced GTPCHI x GFRP complex formation enhances GTPCHI activity by locking the enzyme in the active state.


  • Organizational Affiliation

    Department of Molecular Biology, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GTP Cyclohydrolase I
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J
230Rattus norvegicusMutation(s): 0 
EC: 3.5.4.16
UniProt
Find proteins for P22288 (Rattus norvegicus)
Explore P22288 
Go to UniProtKB:  P22288
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP22288
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
GTP Cyclohydrolase I Feedback Regulatory Protein
K, L, M, N, O
K, L, M, N, O, P, Q, R, S, T
84Rattus norvegicusMutation(s): 0 
UniProt
Find proteins for P70552 (Rattus norvegicus)
Explore P70552 
Go to UniProtKB:  P70552
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP70552
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PHE
Query on PHE

Download Ideal Coordinates CCD File 
BA [auth N]
DA [auth O]
FA [auth P]
IA [auth R]
JA [auth R]
BA [auth N],
DA [auth O],
FA [auth P],
IA [auth R],
JA [auth R],
LA [auth S],
NA [auth T],
V [auth K],
X [auth L],
Z [auth M]
PHENYLALANINE
C9 H11 N O2
COLNVLDHVKWLRT-QMMMGPOBSA-N
K
Query on K

Download Ideal Coordinates CCD File 
AA [auth N]
CA [auth O]
EA [auth P]
GA [auth Q]
HA [auth R]
AA [auth N],
CA [auth O],
EA [auth P],
GA [auth Q],
HA [auth R],
KA [auth S],
MA [auth T],
U [auth K],
W [auth L],
Y [auth M]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.228 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 124.151α = 90
b = 111.723β = 97.37
c = 126.108γ = 90
Software Package:
Software NamePurpose
MLPHAREphasing
CNSrefinement
MOSFLMdata reduction
CCP4data scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-02-20
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-12-27
    Changes: Data collection, Database references, Derived calculations