Download MendeleyX-ray structure of Thermus thermophilus HB8 TT0505
Yoshida, H., Kamitori, S., Agari, Y., Iino, H., Kanagawa, M., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S.To be published.
2E6K
X-ray structure of Thermus thermopilus HB8 TT0505
- PDB DOI: https://doi.org/10.2210/pdb2E6K/pdb
- Classification: TRANSFERASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2006-12-27 Released: 2007-11-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.09 Å
- R-Value Free: 0.259
- R-Value Work: 0.217
- R-Value Observed: 0.217
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transketolase | 651 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: tt0505 EC: 2.2.1.1 |  | |
UniProt | |||||
Find proteins for Q5SM35 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SM35 Go to UniProtKB: Q5SM35 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SM35 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.09 Å
- R-Value Free: 0.259
- R-Value Work: 0.217
- R-Value Observed: 0.217
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 72.61 | α = 72.48 |
| b = 88.96 | β = 89.13 |
| c = 117.18 | γ = 73.36 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| d*TREK | data reduction |
| d*TREK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2007-11-13 Deposition Author(s): Yoshida, H., Kamitori, S., Agari, Y., Iino, H., Kanagawa, M., Nakagawa, N., Ebihara, A., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-11-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.2: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2023-11-15
Changes: Data collection - Version 1.4: 2024-11-20
Changes: Structure summary
