Download MendeleyCrystal Structure of Thioredoxin Wild Type in Hexagonal (p61) Space Group
Godoy-Ruiz, R., Gavira, J.A., Ibarra-Molero, B., Sanchez-Ruiz, J.M.To be published.
2H6X
Crystal Structure of Thioredoxin Wild Type in Hexagonal (p61) Space Group
- PDB DOI: https://doi.org/10.2210/pdb2H6X/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Escherichia coli
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-06-01 Released: 2007-05-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.284
- R-Value Work: 0.219
- R-Value Observed: 0.222
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin | 108 | Escherichia coli | Mutation(s): 0 Gene Names: trxA |  | |
UniProt | |||||
Find proteins for P0AA25 (Escherichia coli (strain K12)) Explore P0AA25 Go to UniProtKB: P0AA25 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0AA25 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | C [auth A], D [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.284
- R-Value Work: 0.219
- R-Value Observed: 0.222
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 102.727 | α = 90 |
| b = 102.727 | β = 90 |
| c = 42.865 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| PROTEUM PLUS | data reduction |
| SAINT | data scaling |
| SADABS | data scaling |
| XPREP | data reduction |
| AMoRE | phasing |
| Coot | model building |
| MolProbity | model building |
Entry History
Deposition Data
- Released Date: 2007-05-15 Deposition Author(s): Gavira, J.A., Godoy-Ruiz, R., Ibarra-Molero, B., Sanchez-Ruiz, J.M.
Revision History (Full details and data files)
- Version 1.0: 2007-05-15
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2012-05-09
Changes: Other - Version 1.4: 2017-10-18
Changes: Refinement description - Version 1.5: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Experimental preparation, Refinement description - Version 1.6: 2024-10-30
Changes: Structure summary
