Download MendeleyCrystal structure of the complex of camel peptidoglycan recognition protein with disaccharide at 3.2A resolution
Sharma, P., Jain, R., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.To be published.
2R2K
Crystal structure of the complex of camel peptidoglycan recognition protein with disaccharide at 3.2A resolution
- PDB DOI: https://doi.org/10.2210/pdb2R2K/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Camelus dromedarius
- Mutation(s): No
- Deposited: 2007-08-26 Released: 2007-09-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.25 Å
- R-Value Free: 0.244
- R-Value Work: 0.209
- R-Value Observed: 0.209
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptidoglycan recognition protein | 171 | Camelus dromedarius | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q9GK12 (Camelus dromedarius) Explore Q9GK12 Go to UniProtKB: Q9GK12 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9GK12 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TLA Query on TLA | G [auth A], H [auth A], I [auth C], J [auth D], K [auth D] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.25 Å
- R-Value Free: 0.244
- R-Value Work: 0.209
- R-Value Observed: 0.209
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 89.272 | α = 90 |
| b = 102.56 | β = 90 |
| c = 163.693 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| AMoRE | phasing |
| CNS | refinement |
| AUTOMAR | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2007-09-18 Deposition Author(s): Sharma, P., Jain, R., Singh, N., Sharma, S., Bhushan, A., Kaur, P., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2007-09-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-10-25
Changes: Data collection, Database references, Refinement description, Structure summary - Version 2.2: 2024-10-30
Changes: Structure summary
