Dihydroorotate dehydrogenase from Leishmania donovani.
Arakaki, T.L., Merritt, E.A., Ullman, B., Yates, P.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dihydroorotate dehydrogenase | 314 | Leishmania donovani | Mutation(s): 0  EC: 1.3.99.11 (PDB Primary Data), 1.3.98.1 (UniProt) | ||
UniProt | |||||
Find proteins for D0VWT2 (Leishmania donovani) Explore D0VWT2  Go to UniProtKB:  D0VWT2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | D0VWT2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FMN Query on FMN | BA [auth D], I [auth A], P [auth B], W [auth C] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N | |||
ORO Query on ORO | CA [auth D], J [auth A], Q [auth B], X [auth C] | OROTIC ACID C5 H4 N2 O4 PXQPEWDEAKTCGB-UHFFFAOYSA-N | |||
DTU Query on DTU | DA [auth D], K [auth A] | (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL C4 H10 O2 S2 VHJLVAABSRFDPM-ZXZARUISSA-N | |||
GOL Query on GOL | R [auth B], Y [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
AZI Query on AZI | H [auth A] | AZIDE ION N3 IVRMZWNICZWHMI-UHFFFAOYSA-N | |||
CL Query on CL | AA [auth D] E [auth A] F [auth A] G [auth A] L [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 83.869 | α = 90 |
b = 83.869 | β = 90 |
c = 188.725 | γ = 120 |
Software Name | Purpose |
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DENZO | data reduction |
SCALEPACK | data scaling |
MOLREP | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
Blu-Ice | data collection |