Download MendeleyCrystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides.
Bonanno, J.B., Rutter, M., Bain, K.T., Iizuka, M., Patterson, K., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3CDX
Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides
- PDB DOI: https://doi.org/10.2210/pdb3CDX/pdb
- Classification: HYDROLASE
- Organism(s): Cereibacter sphaeroides 2.4.1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-02-27 Released: 2008-03-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.244
- R-Value Work: 0.181
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Succinylglutamatedesuccinylase/aspartoacylase | 354 | Cereibacter sphaeroides 2.4.1 | Mutation(s): 0 Gene Names: RSP_3886 |  | |
UniProt | |||||
Find proteins for Q3HKK3 (Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)) Explore Q3HKK3 Go to UniProtKB: Q3HKK3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3HKK3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | G [auth A] H [auth B] I [auth C] J [auth D] K [auth E] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.244
- R-Value Work: 0.181
- R-Value Observed: 0.184
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 152.475 | α = 90 |
| b = 174.426 | β = 90 |
| c = 77.406 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXCD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2008-03-11 Deposition Author(s): Bonanno, J.B., Rutter, M., Bain, K.T., Iizuka, M., Patterson, K., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-03-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
