Download MendeleyThe crystal structure of gluconate kinase from Lactobacillus acidophilus
Zhang, Z., Swaminathan, S., Burley, S.K.To be published.
3GBT
Crystal structure of gluconate kinase from Lactobacillus acidophilus
- PDB DOI: https://doi.org/10.2210/pdb3GBT/pdb
- Classification: TRANSFERASE
- Organism(s): Lactobacillus acidophilus NCFM
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-02-20 Released: 2009-03-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.231
- R-Value Work: 0.199
- R-Value Observed: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Gluconate kinase | 504 | Lactobacillus acidophilus NCFM | Mutation(s): 0 Gene Names: LBA0354 EC: 2.7.1.12 |  | |
UniProt | |||||
Find proteins for Q5FM28 (Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)) Explore Q5FM28 Go to UniProtKB: Q5FM28 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5FM28 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.231
- R-Value Work: 0.199
- R-Value Observed: 0.201
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 122.638 | α = 90 |
| b = 96.008 | β = 93.32 |
| c = 72.94 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| PHENIX | model building |
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2009-03-10 Deposition Author(s): Zhang, Z., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-03-10
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2024-11-20
Changes: Data collection, Database references, Structure summary
