Download MendeleyCrystal structure of oxidoreductase domain protein from Kribbella flavida
Michalska, K., Mack, J.C., McKnight, S.M., Endres, M., Joachimiak, A.To be published.
4H3V
Crystal structure of oxidoreductase domain protein from Kribbella flavida
- PDB DOI: https://doi.org/10.2210/pdb4H3V/pdb
- Classification: Structural Genomics, Unknown Function
- Organism(s): Kribbella flavida DSM 17836
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-09-14 Released: 2012-09-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.177
- R-Value Work: 0.144
- R-Value Observed: 0.144
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxidoreductase domain protein | 390 | Kribbella flavida DSM 17836 | Mutation(s): 0 Gene Names: Kfla_4276 |  | |
UniProt | |||||
Find proteins for D2PU28 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)) Explore D2PU28 Go to UniProtKB: D2PU28 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2PU28 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMT Query on FMT | C [auth A], D [auth A], E [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.68 Å
- R-Value Free: 0.177
- R-Value Work: 0.144
- R-Value Observed: 0.144
- Space Group: P 43 21 2
- Diffraction Data: https://doi.org/10.18430/M34H3V
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.597 | α = 90 |
| b = 70.597 | β = 90 |
| c = 288.538 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELX | model building |
| MLPHARE | phasing |
| DM | model building |
| BUCCANEER | model building |
| Coot | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| DM | phasing |
| BUCCANEER | phasing |
Entry History
Deposition Data
- Released Date: 2012-09-26 Deposition Author(s): Michalska, K., Mack, J.C., McKnight, S.M., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2012-09-26
Type: Initial release - Version 1.1: 2024-10-09
Changes: Data collection, Database references, Derived calculations, Structure summary
