Download MendeleyCrystal structure of complex formed between phospholipase A2 and Biotin-sulfoxide at 1.09 A Resolution
Shukla, P.K., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.To be published.
4QMC
Crystal structure of complex formed between phospholipase A2 and Biotin-sulfoxide at 1.09 A Resolution
- PDB DOI: https://doi.org/10.2210/pdb4QMC/pdb
- Classification: HYDROLASE
- Organism(s): Daboia russelii pulchella
- Mutation(s): No
- Deposited: 2014-06-16 Released: 2014-07-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.09 Å
- R-Value Free: 0.217
- R-Value Work: 0.189
- R-Value Observed: 0.190
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phospholipase A2 VRV-PL-VIIIa | 121 | Daboia russelii pulchella | Mutation(s): 0 EC: 3.1.1.4 |  | |
UniProt | |||||
Find proteins for P59071 (Daboia russelii) Explore P59071 Go to UniProtKB: P59071 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P59071 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BSO Query on BSO | C [auth A] | BIOTIN-D-SULFOXIDE C10 H16 N2 O4 S KCSKCIQYNAOBNQ-OKPRWBIXSA-N |  | ||
| SO4 Query on SO4 | D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | E [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.09 Å
- R-Value Free: 0.217
- R-Value Work: 0.189
- R-Value Observed: 0.190
- Space Group: P 43
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.81 | α = 90 |
| b = 51.81 | β = 90 |
| c = 48.16 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| AMoRE | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2014-07-30 Deposition Author(s): Shukla, P.K., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2014-07-30
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2024-10-30
Changes: Structure summary
