Download MendeleyCrystal structure of aminoglycoside acetyltransferase AAC(3)-Ib
Stogios, P.J.To be published.
4YFJ
Crystal structure of aminoglycoside acetyltransferase AAC(3)-Ib
- PDB DOI: https://doi.org/10.2210/pdb4YFJ/pdb
- Entry: 4YFJ supersedes: 4W83
- Classification: TRANSFERASE
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-02-25 Released: 2015-03-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.236
- R-Value Work: 0.179
- R-Value Observed: 0.182
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Aminoglycoside 3'-N-acetyltransferase | 182 | Pseudomonas aeruginosa | Mutation(s): 0 Gene Names: aac(3)-Ib |  | |
UniProt | |||||
Find proteins for Q51407 (Pseudomonas aeruginosa) Explore Q51407 Go to UniProtKB: Q51407 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q51407 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A] D [auth A] E [auth A] F [auth A] G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.236
- R-Value Work: 0.179
- R-Value Observed: 0.182
- Space Group: P 41 21 2
- Diffraction Data: https://doi.org/10.18430/m34yfj
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.024 | α = 90 |
| b = 77.024 | β = 90 |
| c = 128.66 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
| Coot | model building |
Entry History
Deposition Data
- Released Date: 2015-03-18 Deposition Author(s): Stogios, P.J., Xu, Z., Evdokimova, E., Yim, V., Anderson, W.F., Savchenko, A., Center for Structural Genomics of Infectious Diseases (CSGID)
- This entry supersedes: 4W83
Revision History (Full details and data files)
- Version 1.0: 2015-03-18
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy
