Download MendeleyX-ray Crystal Structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IspC) from Acinetobacter baumannii
Fairman, J.W., Lorimer, D.D., Edwards, T.E.To be published.
4ZN6
X-ray Crystal Structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (IspC) from Acinetobacter baumannii
- PDB DOI: https://doi.org/10.2210/pdb4ZN6/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Acinetobacter baumannii AB307-0294
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-05-04 Released: 2015-05-13
- Funding Organization(s): National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.216
- R-Value Work: 0.172
- R-Value Observed: 0.173
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 406 | Acinetobacter baumannii AB307-0294 | Mutation(s): 0 Gene Names: dxr, ABBFA_001475 EC: 1.1.1.267 |  | |
UniProt | |||||
Find proteins for B7H1U5 (Acinetobacter baumannii (strain AB307-0294)) Explore B7H1U5 Go to UniProtKB: B7H1U5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B7H1U5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | E [auth A], G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.216
- R-Value Work: 0.172
- R-Value Observed: 0.173
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M34ZN6
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.27 | α = 90 |
| b = 65.43 | β = 92.09 |
| c = 121.68 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| BALBES | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-05-13 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2015-05-13
Type: Initial release - Version 1.1: 2017-09-20
Changes: Author supporting evidence, Derived calculations, Source and taxonomy, Structure summary - Version 1.2: 2019-12-25
Changes: Author supporting evidence - Version 1.3: 2023-09-27
Changes: Data collection, Database references, Refinement description
