Complex structure of lysostaphin SH3doamin with peptidoglycan fragment
Jagielska, E., Nowak, E., Bochtler, M., Sabala, I.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lysostaphin | 94 | Staphylococcaceae | Mutation(s): 0  Gene Names: lss EC: 3.4.24.75 | ||
UniProt | |||||
Find proteins for P10547 (Staphylococcus simulans) Explore P10547  Go to UniProtKB:  P10547 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P10547 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
GLY-GLY-GLY-GLY-GLY | C [auth G], D [auth H] | 5 | Staphylococcaceae | Mutation(s): 0  | |
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | G [auth A], L [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
SO4 Query on SO4 | E [auth A] F [auth A] H [auth B] I [auth B] J [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
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a = 50.38 | α = 90 |
b = 54.364 | β = 90 |
c = 63.229 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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The National Center for Research and Development | Poland | PBS1/A8/8/2012 |