6BY2

Closed and deep-inactivated conformation of KcsA-T75A mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.222 

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This is version 1.5 of the entry. See complete history


Literature

Inverted allosteric coupling between activation and inactivation gates in K+channels.

Labro, A.J.Cortes, D.M.Tilegenova, C.Cuello, L.G.

(2018) Proc Natl Acad Sci U S A 115: 5426-5431

  • DOI: https://doi.org/10.1073/pnas.1800559115
  • Primary Citation of Related Structures:  
    6BY2, 6BY3

  • PubMed Abstract: 

    The selectivity filter and the activation gate in potassium channels are functionally and structurally coupled. An allosteric coupling underlies C-type inactivation coupled to activation gating in this ion-channel family (i.e., opening of the activation gate triggers the collapse of the channel's selectivity filter). We have identified the second Threonine residue within the TTVGYGD signature sequence of K + channels as a crucial residue for this allosteric communication. A Threonine to Alanine substitution at this position was studied in three representative members of the K + -channel family. Interestingly, all of the mutant channels exhibited lack of C-type inactivation gating and an inversion of their allosteric coupling (i.e., closing of the activation gate collapses the channel's selectivity filter). A state-dependent crystallographic study of KcsA-T75A proves that, on activation, the selectivity filter transitions from a nonconductive and deep C-type inactivated conformation to a conductive one. Finally, we provide a crystallographic demonstration that closed-state inactivation can be achieved by the structural collapse of the channel's selectivity filter.


  • Organizational Affiliation

    Laboratory for Molecular, Cellular and Network Excitability, University of Antwerp, 2610 Antwerp, Belgium.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody Heavy Chain219Mus musculusMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody Light Chain212Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
pH-gated potassium channel KcsA103Streptomyces coelicolor A3(2)Mutation(s): 2 
Gene Names: kcsAskc1SCO7660SC10F4.33
Membrane Entity: Yes 
UniProt
Find proteins for P0A333 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Explore P0A333 
Go to UniProtKB:  P0A333
Entity Groups  
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UniProt GroupP0A333
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.221 
  • R-Value Observed: 0.222 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 157.178α = 90
b = 157.178β = 90
c = 75.459γ = 90
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1RO1GM097159-01A1
Welch FoundationUnited StatesBI-1757
American Heart AssociationUnited StatesAHA-11SDG5440003

Revision History  (Full details and data files)

  • Version 1.0: 2018-05-09
    Type: Initial release
  • Version 1.1: 2018-05-23
    Changes: Data collection, Database references
  • Version 1.2: 2018-05-30
    Changes: Data collection, Database references
  • Version 1.3: 2019-02-20
    Changes: Author supporting evidence, Data collection
  • Version 1.4: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.5: 2024-11-06
    Changes: Data collection, Database references, Derived calculations, Structure summary