Sirtuin 2 protein with H3K18 myristoylated peptide
Chen, L.F.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NAD-dependent protein deacetylase sirtuin-2 | 304 | Homo sapiens | Mutation(s): 0  Gene Names: SIRT2, SIR2L, SIR2L2 EC: 2.3.1.286 (PDB Primary Data), 2.3.1 (UniProt) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8IXJ6 (Homo sapiens) Explore Q8IXJ6  Go to UniProtKB:  Q8IXJ6 | |||||
PHAROS:  Q8IXJ6 GTEx:  ENSG00000068903  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8IXJ6 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
PRO-ARG-LYS-GLN-LEU-ALA | B [auth C] | 6 | synthetic construct | Mutation(s): 0  | |
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
YDD (Subject of Investigation/LOI) Query on YDD | E [auth C] | [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S)-3,4-bis(oxidanyl)-5-tetradecoxy-oxolan-2-yl]methyl hydrogen phosphate C29 H51 N5 O14 P2 XDVQERDQBQWVRC-UHUMEYFMSA-N | |||
YOY (Subject of Investigation/LOI) Query on YOY | D [auth C] | [[(2S,3aS,5S,6R,6aS)-2-dodecyl-6-oxidanyl-3a,5,6,6a-tetrahydrofuro[2,3-d][1,3]dioxol-5-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate C28 H47 N5 O14 P2 KJBRVZZXXRAVKC-XBVYZWAMSA-N | |||
NCA (Subject of Investigation/LOI) Query on NCA | C [auth A] | NICOTINAMIDE C6 H6 N2 O DFPAKSUCGFBDDF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 37.601 | α = 90 |
b = 78.095 | β = 97.64 |
c = 56.347 | γ = 90 |
Software Name | Purpose |
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HKL-2000 | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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The University Grants Committee, Research Grants Council (RGC) | Hong Kong | HKU/C7037-14G |