Download MendeleyCrystal structure of Thiamine-monophosphate kinase from Stenotrophomonas maltophilia K279a
Abendroth, J., Horanyi, P.S., Lorimer, D.D., Edwards, T.E.To be published.
6XEP
Crystal structure of Thiamine-monophosphate kinase from Stenotrophomonas maltophilia K279a
- PDB DOI: https://doi.org/10.2210/pdb6XEP/pdb
- Classification: TRANSFERASE
- Organism(s): Stenotrophomonas maltophilia K279a
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2020-06-12 Released: 2020-06-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.204
- R-Value Work: 0.166
- R-Value Observed: 0.168
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thiamine-monophosphate kinase | 328 | Stenotrophomonas maltophilia K279a | Mutation(s): 0 Gene Names: thiL, Smlt0731 EC: 2.7.4.16 |  | |
UniProt | |||||
Find proteins for B2FNL5 (Stenotrophomonas maltophilia (strain K279a)) Explore B2FNL5 Go to UniProtKB: B2FNL5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2FNL5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.204
- R-Value Work: 0.166
- R-Value Observed: 0.168
- Space Group: P 21 21 2
- Diffraction Data: https://doi.org/10.18430/m36xep
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 80.44 | α = 90 |
| b = 88.81 | β = 90 |
| c = 44.27 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| PHASER | phasing |
| Coot | model building |
| PHENIX | model building |
Entry History
Deposition Data
- Released Date: 2020-06-24 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2020-06-24
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Database references, Refinement description
