Download MendeleyDarB from B. subtilis
Heidemann, J.L., Neumann, P., Ficner, R.To be published.
6YJ8
DarB-APO
- PDB DOI: https://doi.org/10.2210/pdb6YJ8/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Bacillus subtilis subsp. subtilis str. 168
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2020-04-02 Released: 2021-04-14
- Funding Organization(s): German Research Foundation (DFG)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.251
- R-Value Work: 0.202
- R-Value Observed: 0.205
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CBS domain-containing protein YkuL | 147 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0 Gene Names: ykuL, BSU14130 |  | |
UniProt | |||||
Find proteins for O31698 (Bacillus subtilis (strain 168)) Explore O31698 Go to UniProtKB: O31698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O31698 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG (Subject of Investigation/LOI) Query on PEG | D [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| ACT (Subject of Investigation/LOI) Query on ACT | C [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.251
- R-Value Work: 0.202
- R-Value Observed: 0.205
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 38.67 | α = 90 |
| b = 67.76 | β = 90 |
| c = 103.96 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-04-14 Deposition Author(s): Heidemann, J.L., Neumann, P., Ficner, R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Research Foundation (DFG) | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2021-04-14
Type: Initial release - Version 1.1: 2024-01-24
Changes: Data collection, Database references, Refinement description
