Alternating Access Mechanism in a Minimalistic Light-Driven Proton Pump
Shevchenko, V., Gushchin, I., Polovinkin, V., Kovalev, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Bacteriorhodopsin | 220 | Candidatus Actinomarina minuta | Mutation(s): 0  Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for S5DM51 (Candidatus Actinomarina minuta) Explore S5DM51  Go to UniProtKB:  S5DM51 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | S5DM51 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
OLC Query on OLC | BA [auth B] | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate C21 H40 O4 RZRNAYUHWVFMIP-GDCKJWNLSA-N | |||
OLB Query on OLB | O [auth A] | (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate C21 H40 O4 RZRNAYUHWVFMIP-QJRAZLAKSA-N | |||
LFA Query on LFA | AA [auth B] C [auth A] D [auth A] E [auth A] F [auth A] | EICOSANE C20 H42 CBFCDTFDPHXCNY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
LYR Query on LYR | A, B | L-PEPTIDE LINKING | C26 H42 N2 O2 | LYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 40.688 | α = 90 |
b = 102.009 | β = 99.75 |
c = 56.601 | γ = 90 |
Software Name | Purpose |
---|---|
Aimless | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Agence Nationale de la Recherche (ANR) | France | ANR-19-CE11-0026 |
French Infrastructure for Integrated Structural Biology (FRISBI) | France | ANR-10-INBS-05-02 |
Grenoble Alliance for Integrated Structural Cell Biology (GRAL) | France | ANR-17-EURE-0003 |