7Q1I

Hybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence glycerol

PDB DOI: https://doi.org/10.2210/pdb7Q1I/pdb

Classification: TRANSFERASE
Organism(s): Escherichia coli MS 85-1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-10-20 Released: 2022-04-06
Deposition Author(s): Polyakov, K., Safonova, T.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.229
R-Value Work: 0.179

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Hybrid form of uridine phosphorylase from E. coli and Salmonella typhimurium in the presence glycerol

Polyakov, K., Safonova, T.

To be published.

Macromolecule Content

Total Structure Weight: 54.55 kDa
Atom Count: 4,152
Modelled Residue Count: 500
Deposited Residue Count: 500
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uridine phosphorylase	A [auth AAA], B [auth BBB]	250	Escherichia coli MS 85-1	Mutation(s): 0 Gene Names: udp, HMPREF9350_04039 EC: 2.4.2.3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FLC (Subject of Investigation/LOI) Query on FLC Download Ideal Coordinates CCD File SDF format, chain D [auth AAA] SDF format, chain H [auth BBB] MOL2 format, chain D [auth AAA] MOL2 format, chain H [auth BBB] mmCIF format, chain D [auth AAA] mmCIF format, chain H [auth BBB]	D [auth AAA], H [auth BBB]	CITRATE ANION C₆ H₅ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-K		Interactions Focus chain D [auth AAA] Focus chain H [auth BBB] Interactions & Density Focus chain D [auth AAA] Focus chain H [auth BBB]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [auth AAA] SDF format, chain F [auth AAA] SDF format, chain G [auth AAA] SDF format, chain I [auth BBB] MOL2 format, chain E [auth AAA] MOL2 format, chain F [auth AAA] MOL2 format, chain G [auth AAA] MOL2 format, chain I [auth BBB] mmCIF format, chain E [auth AAA] mmCIF format, chain F [auth AAA] mmCIF format, chain G [auth AAA] mmCIF format, chain I [auth BBB]	E [auth AAA], F [auth AAA], G [auth AAA], I [auth BBB]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth AAA] Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain I [auth BBB] Interactions & Density Focus chain E [auth AAA] Focus chain F [auth AAA] Focus chain G [auth AAA] Focus chain I [auth BBB]
K (Subject of Investigation/LOI) Query on K Download Ideal Coordinates CCD File SDF format, chain C [auth AAA] MOL2 format, chain C [auth AAA] mmCIF format, chain C [auth AAA]	C [auth AAA]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain C [auth AAA] Interactions & Density Focus chain C [auth AAA]