Download MendeleyMutant D24G of uridine phosphorylase from E. coli
Polyakov, K., Safonova, T., Antipov, A., Okorokova, N., Mordkovich, N., Veiko, V.To be published.
7Q32
Mutant D24G of uridine phosphorylase from E. coli
- PDB DOI: https://doi.org/10.2210/pdb7Q32/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2021-10-26 Released: 2022-05-04
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.202
- R-Value Work: 0.154
Starting Model: experimental
View more details
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uridine phosphorylase | A [auth AAA], B [auth BBB] | 250 | Escherichia coli K-12 | Mutation(s): 1 Gene Names: udp, b3831, JW3808 EC: 2.4.2.3 |  |
UniProt | |||||
Find proteins for P12758 (Escherichia coli (strain K12)) Explore P12758 Go to UniProtKB: P12758 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12758 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FLC (Subject of Investigation/LOI) Query on FLC | C [auth AAA], E [auth BBB] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K |  | ||
| K (Subject of Investigation/LOI) Query on K | D [auth BBB] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.202
- R-Value Work: 0.154
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 150.07 | α = 90 |
| b = 150.07 | β = 90 |
| c = 46.36 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-05-04 Deposition Author(s): Safonova, T., Polyakov, K., Antipov, A., Okorokova, N., Mordkovich, N., Veiko, V.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | Russian Federation | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-05-04
Type: Initial release - Version 1.1: 2022-05-11
Changes: Database references, Structure summary - Version 1.2: 2024-01-31
Changes: Data collection, Derived calculations, Refinement description
