Download MendeleyCrystal structure of aminophenol dioxygenase from Pseudomonas species AP-3
Shi, Q.L., Su, D.To be published.
8IHG
Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3
- PDB DOI: https://doi.org/10.2210/pdb8IHG/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Pseudomonas sp.
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-02-22 Released: 2024-02-28
- Funding Organization(s): Ministry of Science and Technology (MoST, China)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.86 Å
- R-Value Free: 0.234
- R-Value Work: 0.179
- R-Value Observed: 0.181
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-aminophenol 1,6-dioxygenase beta subunit | 305 | Pseudomonas sp. | Mutation(s): 0 Gene Names: amnB EC: 1.13.11.74 |  | |
UniProt | |||||
Find proteins for O33477 (Pseudomonas sp) Explore O33477 Go to UniProtKB: O33477 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O33477 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-aminophenol 1,6-dioxygenase alpha subunit | 272 | Pseudomonas sp. | Mutation(s): 0 Gene Names: amnA |  | |
UniProt | |||||
Find proteins for O33478 (Pseudomonas sp) Explore O33478 Go to UniProtKB: O33478 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O33478 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2AF (Subject of Investigation/LOI) Query on 2AF | F [auth A], G [auth C] | 2-AMINOPHENOL C6 H7 N O CDAWCLOXVUBKRW-UHFFFAOYSA-N |  | ||
| GOL (Subject of Investigation/LOI) Query on GOL | H [auth C], J [auth C] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ZN (Subject of Investigation/LOI) Query on ZN | E [auth A], I [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.86 Å
- R-Value Free: 0.234
- R-Value Work: 0.179
- R-Value Observed: 0.181
- Space Group: P 61 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 153.475 | α = 90 |
| b = 153.475 | β = 90 |
| c = 312.036 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| xia2 | data reduction |
| xia2 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Science and Technology (MoST, China) | China | 2017YFA0505903 |
Revision History (Full details and data files)
- Version 1.0: 2024-02-28
Type: Initial release
