Download MendeleyBacterial protein cpx
Gully, B.S., Rossjohn, J.To be published.
8U0Y
Bacterial protein cpx
- PDB DOI: https://doi.org/10.2210/pdb8U0Y/pdb
- Classification: LUMINESCENT PROTEIN
- Organism(s): Ceramium secundatum, Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-08-29 Released: 2024-09-04
- Funding Organization(s): Australian Research Council (ARC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.258
- R-Value Work: 0.233
- R-Value Observed: 0.234
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fluorescent protein | 164 | Ceramium secundatum | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fluorescent protein | 176 | Ceramium secundatum | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Receptor A | 196 | Mus musculus | Mutation(s): 0 Gene Names: TRAV4D-4 |  | |
UniProt | |||||
Find proteins for Q5R1F7 (Mus musculus) Explore Q5R1F7 Go to UniProtKB: Q5R1F7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5R1F7 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Receptor B | 237 | Mus musculus | Mutation(s): 0 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PUB Query on PUB | E [auth A], F [auth A], G [auth B], H [auth B], I [auth B] | PHYCOUROBILIN C33 H42 N4 O6 KDCCOOGTVSRCHX-YYVBKQGDSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.258
- R-Value Work: 0.233
- R-Value Observed: 0.234
- Space Group: P 6 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 221.79 | α = 90 |
| b = 221.79 | β = 90 |
| c = 139.34 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-09-04 Deposition Author(s): Gully, B.S., Rossjohn, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Australian Research Council (ARC) | Australia | DP230102073 |
Revision History (Full details and data files)
- Version 1.0: 2024-09-04
Type: Initial release - Version 1.1: 2024-10-16
Changes: Structure summary
