8B4G

Structure of a fungal LPMO bound to ligands


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.149 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structure of a fungal LPMO bound to ligands

Banerjee, S.Huang, Z.Brander, S.Johansen, K.S.Lo Leggio, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gh61 isozyme aA [auth AAA]228Thermoascus aurantiacusMutation(s): 0 
EC: 3.2.1.4 (PDB Primary Data), 1.14.99.56 (UniProt)
UniProt
Find proteins for G3XAP7 (Thermoascus aurantiacus)
Explore G3XAP7 
Go to UniProtKB:  G3XAP7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG3XAP7
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

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C [auth AAA]2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
2HA (Subject of Investigation/LOI)
Query on 2HA

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E [auth AAA]Dihydroxyacetone
C3 H6 O3
RXKJFZQQPQGTFL-UHFFFAOYSA-N
AKR
Query on AKR

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D [auth AAA],
F [auth AAA]
ACRYLIC ACID
C3 H4 O2
NIXOWILDQLNWCW-UHFFFAOYSA-N
CU
Query on CU

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B [auth AAA]COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
CL
Query on CL

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G [auth AAA],
H [auth AAA]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
HIC
Query on HIC
A [auth AAA]L-PEPTIDE LINKINGC7 H11 N3 O2HIS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.149 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 34.402α = 90
b = 87.312β = 104.812
c = 37.482γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Novo Nordisk FoundationDenmark--
Danish Council for Independent ResearchDenmark--
Swedish Research CouncilSweden--

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-03
    Type: Initial release