Download MendeleyResearch for the crystal structure of L-azetidine-2-carboxylate hydrolase
Toyoda, M., Jitsumori, K., Mikami, B., Mizutani, K., Esaki, N., Wackett, L.P., Kurihara, T.To be published.
8YWO
Crystal structure of L-azetidine-2-carboxylate hydrolase soaked in (S)-azetidine-2-carboxylic acid
- PDB DOI: https://doi.org/10.2210/pdb8YWO/pdb
- Classification: HYDROLASE
- Organism(s): Pseudomonas sp. A2C
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-03-31 Released: 2024-05-08
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.58 Å
- R-Value Free: 0.183
- R-Value Work: 0.132
- R-Value Observed: 0.134
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| (S)-2-haloacid dehalogenase | 240 | Pseudomonas sp. A2C | Mutation(s): 0 EC: 3.8.1.2 (PDB Primary Data), 3.5 (UniProt) |  | |
UniProt | |||||
Find proteins for B2Z3V8 (Pseudomonas sp. (strain A2C)) Explore B2Z3V8 Go to UniProtKB: B2Z3V8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2Z3V8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 02A (Subject of Investigation/LOI) Query on 02A | B [auth A] | (2S)-azetidine-2-carboxylic acid C4 H7 N O2 IADUEWIQBXOCDZ-VKHMYHEASA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.58 Å
- R-Value Free: 0.183
- R-Value Work: 0.132
- R-Value Observed: 0.134
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.105 | α = 90 |
| b = 64.419 | β = 106.99 |
| c = 54.307 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-05-08 Deposition Author(s): Toyoda, M., Mizutani, K., Mikami, B., Wackett, L.P., Esaki, N., Kurihara, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-05-08
Type: Initial release
