Download MendeleyLmCpfC H182A variant in complex with iron coproporhyrin III
Gabler, T., Hofbauer, S.To be published.
9F0G
LmCpfC H182A variant in complex with iron coproporhyrin III
- PDB DOI: https://doi.org/10.2210/pdb9F0G/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Listeria monocytogenes
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): Yes
- Deposited: 2024-04-16 Released: 2024-04-24
- Funding Organization(s): Austrian Science Fund
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.219
- R-Value Work: 0.172
- R-Value Observed: 0.174
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Coproporphyrin III ferrochelatase | 311 | Listeria monocytogenes | Mutation(s): 1 Gene Names: cpfC, hemH, lmo2211 EC: 4.99.1.9 |  | |
UniProt | |||||
Find proteins for Q8Y565 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y565 Go to UniProtKB: Q8Y565 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8Y565 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FEC (Subject of Investigation/LOI) Query on FEC | B [auth A] | 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC ACID FERROUS COMPLEX C36 H36 Fe N4 O8 FEDZMOFKVKOYTI-RGGAHWMASA-L |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CA Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.219
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 37.534 | α = 90 |
| b = 68.09 | β = 102.71 |
| c = 63.2 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-04-24 Deposition Author(s): Gabler, T., Hofbauer, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Austrian Science Fund | Austria | P33544 |
Revision History (Full details and data files)
- Version 1.0: 2024-04-24
Type: Initial release
