Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth C]d1gk8c1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
B [auth C]d1gk8c2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ad1gk8a1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ad1gk8a2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
C [auth E]d1gk8e1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
C [auth E]d1gk8e2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
D [auth G]d1gk8g1 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
D [auth G]d1gk8g2 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
H [auth O]d1gk8o_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
E [auth I]d1gk8i_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
F [auth K]d1gk8k_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
G [auth M]d1gk8m_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit RuBisCO, small subunit Ribulose 1,5-bisphosphate carboxylase-oxygenase (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8035888 3000552 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035891 3001258 SCOP2B (2022-06-29)
ASCOP2 FamilyRuBisCo, large subunit, C-terminal domain 8023508 4003287 SCOP2 (2022-06-29)
ASCOP2 FamilyRibulose 1, 5-bisphosphate carboxylase-oxygenase 8023511 4001311 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRuBisCo, C-terminal domain 8035888 3000552 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035891 3001258 SCOP2 (2022-06-29)
C [auth E]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8035888 3000552 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035891 3001258 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyRuBisCo, C-terminal domain 8035888 3000552 SCOP2B (2022-06-29)
D [auth G]SCOP2B SuperfamilyRuBisCO, large subunit, small (N-terminal) domain 8035891 3001258 SCOP2B (2022-06-29)
H [auth O]SCOP2B SuperfamilyRuBisCO, small subunit 8035897 3001622 SCOP2B (2022-06-29)
E [auth I]SCOP2 FamilyRuBisCO, small subunit 8023517 4001455 SCOP2 (2022-06-29)
E [auth I]SCOP2 SuperfamilyRuBisCO, small subunit 8035897 3001622 SCOP2 (2022-06-29)
F [auth K]SCOP2B SuperfamilyRuBisCO, small subunit 8035897 3001622 SCOP2B (2022-06-29)
G [auth M]SCOP2B SuperfamilyRuBisCO, small subunit 8035897 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]RuBisCO_large_Ne1gk8C1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
B [auth C]RuBisCO_largee1gk8C2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
ARuBisCO_large_Ne1gk8A1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee1gk8A2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
C [auth E]RuBisCO_large_Ne1gk8E1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
C [auth E]RuBisCO_largee1gk8E2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
D [auth G]RuBisCO_large_Ne1gk8G1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
D [auth G]RuBisCO_largee1gk8G2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
H [auth O]RuBisCO_smalle1gk8O1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
E [auth I]RuBisCO_smalle1gk8I1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
F [auth K]RuBisCO_smalle1gk8K1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
G [auth M]RuBisCO_smalle1gk8M1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth C]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
B [auth C]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C [auth E]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C [auth E]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
D [auth G]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
D [auth G]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
H [auth O]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
E [auth I]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
F [auth K]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
G [auth M]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B [auth C],
C [auth E],
D [auth G]
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A,
B [auth C],
C [auth E],
D [auth G]
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
E [auth I],
F [auth K],
G [auth M],
H [auth O]
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B [auth C],
C [auth E],
D [auth G]
RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN
E [auth I],
F [auth K],
G [auth M],
H [auth O]
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A,
B [auth C],
C [auth E],
D [auth G]
HYP Parent Component: PRO

RESIDAA0030

PSI-MOD :  4-hydroxy-L-proline MOD:00039
A,
B [auth C],
C [auth E],
D [auth G]
KCX Parent Component: LYS

RESIDAA0030

A,
B [auth C],
C [auth E],
D [auth G]
SMC Parent Component: CYS

RESIDAA0030 , AA0234

PSI-MOD :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239
E [auth I],
F [auth K],
G [auth M],
H [auth O]
MME Parent Component: MET

RESIDAA0030 , AA0234 , AA0064

PSI-MOD :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 , N-methyl-L-methionine MOD:00073