1GK8
Rubisco from Chlamydomonas reinhardtii
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
A | SCOP2 Family | RuBisCo, large subunit, C-terminal domain | 8023508 | 4003287 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Ribulose 1, 5-bisphosphate carboxylase-oxygenase | 8023511 | 4001311 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2 (2022-06-29) |
C [auth E] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | RuBisCo, C-terminal domain | 8035888 | 3000552 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | RuBisCO, large subunit, small (N-terminal) domain | 8035891 | 3001258 | SCOP2B (2022-06-29) |
H [auth O] | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
E [auth I] | SCOP2 Family | RuBisCO, small subunit | 8023517 | 4001455 | SCOP2 (2022-06-29) |
E [auth I] | SCOP2 Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2 (2022-06-29) |
F [auth K] | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
G [auth M] | SCOP2B Superfamily | RuBisCO, small subunit | 8035897 | 3001622 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | RuBisCO_large_N | e1gk8C1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
B [auth C] | RuBisCO_large | e1gk8C2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
A | RuBisCO_large_N | e1gk8A1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
A | RuBisCO_large | e1gk8A2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
C [auth E] | RuBisCO_large_N | e1gk8E1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
C [auth E] | RuBisCO_large | e1gk8E2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
D [auth G] | RuBisCO_large_N | e1gk8G1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: RuBisCO_large_N | ECOD (1.6) |
D [auth G] | RuBisCO_large | e1gk8G2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: RuBisCO_large | ECOD (1.6) |
H [auth O] | RuBisCO_small | e1gk8O1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
E [auth I] | RuBisCO_small | e1gk8I1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
F [auth K] | RuBisCO_small | e1gk8K1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
G [auth M] | RuBisCO_small | e1gk8M1 | A: a+b two layers | X: Reverse ferredoxin | H: RuBisCO, small subunit (From Topology) | T: RuBisCO, small subunit | F: RuBisCO_small | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | PF02788 | Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N) | Ribulose bisphosphate carboxylase large chain, N-terminal domain | The N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. | Domain |
A, B [auth C], C [auth E], D [auth G] | PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
E [auth I], F [auth K], G [auth M], H [auth O] | PF00101 | Ribulose bisphosphate carboxylase, small chain (RuBisCO_small) | Ribulose bisphosphate carboxylase, small chain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, B [auth C], C [auth E], D [auth G] | RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE LARGE CHAIN | |||
E [auth I], F [auth K], G [auth M], H [auth O] | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1 |
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A, B [auth C], C [auth E], D [auth G] | HYP | Parent Component: PRO :  AA0030 :  4-hydroxy-L-proline MOD:00039 |
A, B [auth C], C [auth E], D [auth G] | KCX | Parent Component: LYS :  AA0030 |
A, B [auth C], C [auth E], D [auth G] | SMC | Parent Component: CYS :  AA0030 , AA0234 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 |
E [auth I], F [auth K], G [auth M], H [auth O] | MME | Parent Component: MET :  AA0030 , AA0234 , AA0064 :  4-hydroxy-L-proline MOD:00039 , S-methyl-L-cysteine MOD:00239 , N-methyl-L-methionine MOD:00073 |