Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3itba2 All beta proteins Penicillin-binding protein associated domain Penicillin-binding protein associated domain automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad3itba1 Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd3itbb2 All beta proteins Penicillin-binding protein associated domain Penicillin-binding protein associated domain automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd3itbb1 Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd3itbc2 All beta proteins Penicillin-binding protein associated domain Penicillin-binding protein associated domain automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Cd3itbc1 Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd3itbd2 All beta proteins Penicillin-binding protein associated domain Penicillin-binding protein associated domain automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Dd3itbd1 Multi-domain proteins (alpha and beta) beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APBP5_Ce3itbA1 A: beta sandwichesX: Penicillin-binding protein associated domain (From Topology)H: Penicillin-binding protein associated domain (From Topology)T: Penicillin-binding protein associated domainF: PBP5_CECOD (1.6)
APeptidase_S11_1ste3itbA2 A: alpha complex topologyX: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: alpha-helical domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_1stECOD (1.6)
APeptidase_S11_2nde3itbA3 A: a+b three layersX: Profilin-likeH: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: a+b domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_2ndECOD (1.6)
BPBP5_Ce3itbB1 A: beta sandwichesX: Penicillin-binding protein associated domain (From Topology)H: Penicillin-binding protein associated domain (From Topology)T: Penicillin-binding protein associated domainF: PBP5_CECOD (1.6)
BPeptidase_S11_1ste3itbB2 A: alpha complex topologyX: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: alpha-helical domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_1stECOD (1.6)
BPeptidase_S11_2nde3itbB3 A: a+b three layersX: Profilin-likeH: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: a+b domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_2ndECOD (1.6)
CPBP5_Ce3itbC1 A: beta sandwichesX: Penicillin-binding protein associated domain (From Topology)H: Penicillin-binding protein associated domain (From Topology)T: Penicillin-binding protein associated domainF: PBP5_CECOD (1.6)
CPeptidase_S11_1ste3itbC2 A: alpha complex topologyX: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: alpha-helical domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_1stECOD (1.6)
CPeptidase_S11_2nde3itbC3 A: a+b three layersX: Profilin-likeH: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: a+b domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_2ndECOD (1.6)
DPBP5_Ce3itbD1 A: beta sandwichesX: Penicillin-binding protein associated domain (From Topology)H: Penicillin-binding protein associated domain (From Topology)T: Penicillin-binding protein associated domainF: PBP5_CECOD (1.6)
DPeptidase_S11_1ste3itbD2 A: alpha complex topologyX: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: alpha-helical domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_1stECOD (1.6)
DPeptidase_S11_2nde3itbD3 A: a+b three layersX: Profilin-likeH: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology)T: a+b domain in beta-lactamase/transpeptidase-like proteinsF: Peptidase_S11_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00768D-alanyl-D-alanine carboxypeptidase (Peptidase_S11)D-alanyl-D-alanine carboxypeptidase- Domain
A, B, C, D
PF07943Penicillin-binding protein 5, C-terminal domain (PBP5_C)Penicillin-binding protein 5, C-terminal domainPenicillin-binding protein 5 expressed by E. coli (Swiss:P04287) functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (Pfam:PF00768) is ...Penicillin-binding protein 5 expressed by E. coli (Swiss:P04287) functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (Pfam:PF00768) is the catalytic domain. The C-terminal domain featured in this family is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
D-alanyl-D-alanine carboxypeptidase DacC
E [auth L]Peptidoglycan substrate (AMV)A(FGA)K(DAL)(DAL)---

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E [auth L]DAL RESIDAA0111 , AA0191

PSI-MOD :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
E [auth L]FGA RESIDAA0111 , AA0191