3F2B
DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP, Mg and Zn
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | tRNA_anti-codon_1 | e3f2bA7 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: tRNA_anti-codon_1 | ECOD (1.6) |
A | HHH_6 | e3f2bA5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_6 | ECOD (1.6) |
A | DNA_pol3_alpha_C | e3f2bA4 | A: alpha arrays | X: DNA polymerase III finger domain (From Topology) | H: DNA polymerase III finger domain (From Topology) | T: DNA polymerase III finger domain | F: DNA_pol3_alpha_C | ECOD (1.6) |
A | DNA_pol3_alpha_N | e3f2bA1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: DNA_pol3_alpha_N | ECOD (1.6) |
A | PHP | e3f2bA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PHP | ECOD (1.6) |
A | polC | e3f2bA6 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: polC | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
A | 3.20.20.140 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Metal-dependent hydrolases | CATH (4.3.0) |
A | 3.30.1900.20 | Alpha Beta | 2-Layer Sandwich | glyoxalase-related enzyme like fold | CATH (4.3.0) | |
A | 6.10.50.10 | Special | Helix non-globular | Insulin-like, subunit E | CATH (4.3.0) | |
A | 1.10.150.700 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
A | 6.10.140.1510 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
A | 1.10.150.870 | Mainly Alpha | Orthogonal Bundle | DNA polymerase | domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02811 | PHP domain (PHP) | PHP domain | - | Family | |
PF07733 | Bacterial DNA polymerase III alpha NTPase domain (DNA_pol3_alpha) | Bacterial DNA polymerase III alpha NTPase domain | - | Domain | |
PF01336 | OB-fold nucleic acid binding domain (tRNA_anti-codon) | OB-fold nucleic acid binding domain | This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an a ... | Domain | |
PF17657 | Bacterial DNA polymerase III alpha subunit finger domain (DNA_pol3_finger) | Bacterial DNA polymerase III alpha subunit finger domain | - | Domain | |
PF14579 | Helix-hairpin-helix motif (HHH_6) | Helix-hairpin-helix motif | The HHH domain is a short DNA-binding domain [1]. | Domain | |