3F2B

DNA Polymerase PolC from Geobacillus kaustophilus complex with DNA, dGTP, Mg and Zn


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.328920% PEG 2000 MME, 0.1M PHOSPHATE- CITRATE, 200MM LITHIUM SULFATE, PH 5.3, VAPOR DIFFUSION, pH 5.30, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
2.9257.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.174α = 90
b = 140.793β = 90
c = 184.524γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCD2008-04-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.10.999887ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.443.5299.90.10110.25.859793
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.491000.8244.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.3943.525970330170.2310.2280.273RANDOM43.59
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.772.29-0.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.326
r_dihedral_angle_4_deg20.495
r_dihedral_angle_3_deg20.471
r_dihedral_angle_1_deg6.088
r_scangle_it2.553
r_angle_refined_deg1.609
r_scbond_it1.593
r_mcangle_it0.981
r_mcbond_it0.512
r_chiral_restr0.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.326
r_dihedral_angle_4_deg20.495
r_dihedral_angle_3_deg20.471
r_dihedral_angle_1_deg6.088
r_scangle_it2.553
r_angle_refined_deg1.609
r_scbond_it1.593
r_mcangle_it0.981
r_mcbond_it0.512
r_chiral_restr0.108
r_bond_refined_d0.012
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7815
Nucleic Acid Atoms631
Solvent Atoms95
Heterogen Atoms50

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling