4DWR
RNA ligase RtcB/Mn2+ complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Hypothetical protein PH1602 | 8041707 | 3000172 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Hypothetical protein PH1602 | 8041707 | 3000172 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Hypothetical protein PH1602 | 8041707 | 3000172 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | RtcB | e4dwrB1 | A: a+b two layers | X: Alpha-beta plaits | H: Hypothetical protein PH1602 (From Topology) | T: Hypothetical protein PH1602 | F: RtcB | ECOD (1.6) |
B [auth A] | RtcB | e4dwrA1 | A: a+b two layers | X: Alpha-beta plaits | H: Hypothetical protein PH1602 (From Topology) | T: Hypothetical protein PH1602 | F: RtcB | ECOD (1.6) |
C | RtcB | e4dwrC1 | A: a+b two layers | X: Alpha-beta plaits | H: Hypothetical protein PH1602 (From Topology) | T: Hypothetical protein PH1602 | F: RtcB | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.90.1860.10 | Alpha Beta | Alpha-Beta Complex | tRNA-splicing ligase RtcB | tRNA-splicing ligase RtcB | CATH (4.3.0) |
B [auth A] | 3.90.1860.10 | Alpha Beta | Alpha-Beta Complex | tRNA-splicing ligase RtcB | tRNA-splicing ligase RtcB | CATH (4.3.0) |
C | 3.90.1860.10 | Alpha Beta | Alpha-Beta Complex | tRNA-splicing ligase RtcB | tRNA-splicing ligase RtcB | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C | PF01139 | tRNA-splicing ligase RtcB (RtcB) | tRNA-splicing ligase RtcB | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C | IPR036844 | Hint domain superfamily | Homologous Superfamily |
A [auth B], B [auth A], C | IPR036025 | tRNA-splicing ligase RtcB-like superfamily | Homologous Superfamily |
A [auth B], B [auth A], C | IPR030934 | Intein C-terminal splicing region | Conserved Site |
A [auth B], B [auth A], C | IPR006142 | Intein | Domain |
A [auth B], B [auth A], C | IPR004042 | Intein DOD homing endonuclease, central region | Domain |
A [auth B], B [auth A], C | IPR027434 | Homing endonuclease | Homologous Superfamily |
A [auth B], B [auth A], C | IPR006141 | Intein N-terminal splicing region | PTM |
A [auth B], B [auth A], C | IPR004860 | Homing endonuclease, LAGLIDADG domain | Domain |
A [auth B], B [auth A], C | IPR003587 | Hint domain N-terminal | Domain |
A [auth B], B [auth A], C | IPR001233 | RNA-splicing ligase, RtcB | Family |
A [auth B], B [auth A], C | IPR003586 | Hint domain C-terminal | Domain |