Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AJmjC_1e4ezhA1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: JmjC_1ECOD (1.6)
AKOG1246_2nde4ezhA2 A: alpha bundlesX: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology)H: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology)T: C-terminal helical domain in Jumonji domain-containing histone demethylasesF: KOG1246_2ndECOD (1.6)
AKOG1246_3rde4ezhA3 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: KOG1246_3rdECOD (1.6)
BJmjC_1e4ezhB1 A: beta sandwichesX: jelly-rollH: Double-stranded beta-helix (From Topology)T: Double-stranded beta-helixF: JmjC_1ECOD (1.6)
BKOG1246_2nde4ezhB3 A: alpha bundlesX: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology)H: C-terminal helical domain in Jumonji domain-containing histone demethylases (From Topology)T: C-terminal helical domain in Jumonji domain-containing histone demethylasesF: KOG1246_2ndECOD (1.6)
BKOG1246_3rde4ezhB2 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: KOG1246_3rdECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.650 Mainly Beta Sandwich Jelly Rolls CupinCATH (4.3.0)
A1.20.58.1370 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (4.3.0)
A2.10.110.20 Mainly Beta Ribbon Cysteine Rich Protein CATH (4.3.0)
B2.60.120.650 Mainly Beta Sandwich Jelly Rolls CupinCATH (4.3.0)
B1.20.58.1370 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (4.3.0)
B2.10.110.20 Mainly Beta Ribbon Cysteine Rich Protein CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21322Lysine-specific demethylase 6/UTY, C-terminal helical domain (KDM6_C-hel)Lysine-specific demethylase 6/UTY, C-terminal helical domainHistone lysine (K) demethylases (KDMs) catalyse the demethylation of lysine residue from histone tails. This entry incudes KDM6 subfamily that contains a conserved catalytic Jumonji C (JmjC) domain and includes KDM6A (also known as UTX), KDM6B (also ...Histone lysine (K) demethylases (KDMs) catalyse the demethylation of lysine residue from histone tails. This entry incudes KDM6 subfamily that contains a conserved catalytic Jumonji C (JmjC) domain and includes KDM6A (also known as UTX), KDM6B (also known as JMJD3) and the related histone demethylase UTY [[1-4]. This is the C-terminal helical domain localised adjacent the JmjC domain.
Domain
A, B
PF02373JmjC domain, hydroxylase (JmjC)JmjC domain, hydroxylaseThe JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the ...The JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalysing hydroxylation [5].
Domain
A, B
PF21326KDM6, GATA-like (KDM6_GATAL)KDM6, GATA-likeHistone lysine (K) demethylases (KDMs) catalyse the demethylation of lysine residue from histone tails. This entry includes KDM6 subfamily that contains a conserved catalytic Jumonji C (JmjC) domain and includes KDM6A (also known as UTX), KDM6B (also ...Histone lysine (K) demethylases (KDMs) catalyse the demethylation of lysine residue from histone tails. This entry includes KDM6 subfamily that contains a conserved catalytic Jumonji C (JmjC) domain and includes KDM6A (also known as UTX), KDM6B (also known as JMJD3) and the related histone demethylase UTY (also known as KMD6C) [1,2]. This entry represents the Zn2+-coordinated GATA-like (GATAL) domain [1,2], which seems to be sensitive to redox environment. It is involved in substrate binding [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Lysine-specific demethylase 6B
C, D
SYNTHESIZED methylation peptide

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C, D
M3L Parent Component: LYS

RESIDAA0074

PSI-MOD :  N6,N6,N6-trimethyl-L-lysine MOD:00083