Enhanced Sequence Display

05/31

(Click image to enlarge)
Protein modifications mapped onto the sequence diagram and Jmol view of PDB entry 1B0V.

The sequence tab available from each PDB entry's Structure Summary page was recently enhanced and improved.

The sequence tab offers a diagram representation of the sequence. Each macromolecule chain can be annotated with domain assignments, secondary structure, and structural features such as SNPs (Single Nucleotide Polymorphism), sites defined in the structure entry (i.e., binding sites of ligands) and protein modifications (i.e., posttranslational modifications). These annotations can be mapped on to the 3D Jmol view of the entry for further exploration.

Using the Display Parameters box, users can toggle between the display of unique chains and all chains. By default, only unique chains are displayed. This box can also toggle the display of the UniProtKB reference sequence.

For more information about the sequence tab and about other features recently added to the website, see the What's New page.

News Index

• 12/27 Happy Holidays

• 12/20 Notice for REFMAC Users

• 12/13 Looking for Ligands

• 12/13 Paper Published

• 12/06 Latest Website Release

• 11/29 Search the PDB for homo- and hetero-multimer structures

• 11/22 Customize Your RCSB PDB Homepage

• 11/15 Molecule of the Month News

• 11/08 Use the Top Bar Suggestion Box for Quick and Precise Searching

• 11/01 New Target Registration Database

• 10/25 PDB40 Symposium

• 10/18 Newsletter published

• 10/11 Educational Resources for Mobile Devices

• 10/04 PDB Pioneers

• 09/27 Poster Prize Awarded at IUCr

• 09/20 New Structures Widget

• 09/13 Latest Website Release

• 09/06 Tools for Education

• 08/30 Validate Structure Factor Diffraction Data with SF-Tool

• 08/23 New pdb_extract Release

• 08/16 RCSB PDB Poster Prize at IUCr

• 08/16 wwPDB Events at IUCr (August 22-30, 2011)

• 08/09 Poster Prize Awarded at ISMB

• 08/02 Different Ways To Explore New Entries

• 08/02 PDB40 Abstracts Due August 15

• 07/26 Analyze small molecule interactions in the PDB with Ligand Explorer

• 07/26 Travel Award Applications for PDB40 due August 1

• 07/19 Protein Society Meeting

• 07/19 Travel Award Applications for PDB40 due August 1

• 07/12 ISMB and 3DSIG Meetings

• 07/05 Newsletter published

• 06/28 Browse Membrane Transport Proteins

• 06/21 Build complex queries with Advanced Search

• 06/14 Poster Prize Awarded at ACA

• 06/07 Browse the PDB by GO Terms, EC Number, Source Organism, and More

• 05/31 Enhanced Sequence Display

• 05/24 Upcoming Meeting: ACA

• 05/17 Validate Entries Before Deposition

• 05/10 Educational Resources to Explore a Structural View of Biology

• 05/03 Newsletter published

• 04/26 New Publication

• 04/26 Rutgers Day (April 30)

• 04/19 Latest Website Release

• 04/12 DNA Day 2011: April 15

• 04/12 Narrated RCSB PDB Tutorial Updated

• 04/05 J.P. Stevens HS Wins NJ Protein Modeling Event

• 03/29 The Structural Biology of HIV

• 03/22 Quick Jmol Views

• 03/15 Visit us at the San Diego Science Festival on March 26

• 03/15 Paper Published

• 03/08 Depositing Structures with Ligands

• 03/01 Upcoming Meetings

• 02/22 Structural Neighbors

• 02/15 Upcoming Meeting: AAAS Meeting and Family Days

• 02/08 Create High Resolution Images

• 02/01 Store Personal Annotations With MyPDB

• 01/25 NJ Science Olympiad Protein Modeling Results

• 01/18 Newsletter published

• 01/11 Papers Published

• 01/04 Structural Biology Knowledgebase Widget