Web Services for Accessing PDB Data

01/10

Web Services can help software developers build tools that efficiently interact with PDB data. Instead of storing coordinate files and related data locally, Web Services let software tools access the RCSB PDB remotely. Detailed documentation for accessing these Web Services is available (RESTful | SOAP).

RESTful services exchange XML files in response to URL requests. RESTful search services return a list of IDs for Advanced Search and SMILES-based queries. RESTful fetch services return data when given IDs, including PDB entity descriptions, ligand information, third-party annotations for protein chains, and PDB to UniProtKB mappings. Web Services can also be used to generate pre-defined summary and customizable reports for query results. A new service for accessing pre-released sequences in FASTA format has been recently added.

Improvements are being made based on community feedback. Please let us know if there are website options that you think should be offered as a web service.

News Index

• 12/25 Happy Holidays

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• 12/11 Announcement: Meeting on Hybrid Methods

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• 08/14 Poster Prize Awarded at ISMB

• 08/14 Improved Ligand Reports

• 08/07 Build complex queries with Advanced Search

• 07/31 Protein Society Annual Symposium

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• 07/24 Upcoming Meeting: ACA

• 07/17 Different Ways To Explore New Entries

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• 06/19 National Protein Modeling Champions

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• 06/12 Top Bar SMILES String Searching

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• 05/22 Domain-based Structural Alignments

• 05/15 New Poster: Virus Structures

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• 04/24 Rutgers Day (April 28)

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• 04/10 Spring Newsletter Published

• 04/03 Depositing Structures with Ligands

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• 01/31 Free Webinar on How to use the RCSB PDB

• 01/31 Announcement: Meeting on Hybrid Methods

• 01/24 Newsletter Published

• 01/17 NJ Science Olympiad Protein Modeling Results

• 01/10 Web Services for Accessing PDB Data

• 01/03 Annual Report Published